Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F10f
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.57 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 243 FIVSYSVSSLFINACIAVFKSFTLFK 166
           FI+  S+SS +I   I VF  + +FK
Sbjct: 343 FIIYSSLSSFYIPCIIMVFLYYNIFK 368


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 73  ELKSYNCVP 99
           +L SYNCVP
Sbjct: 690 DLSSYNCVP 698


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +3

Query: 306 FSKPNKQLHCGLELFY 353
           F  P K  H GL + Y
Sbjct: 49  FPAPGKHFHIGLAIIY 64


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +3

Query: 306 FSKPNKQLHCGLELFY 353
           F  P K  H GL + Y
Sbjct: 49  FPAPGKHFHIGLAIIY 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,130
Number of Sequences: 438
Number of extensions: 2135
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)