Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F07f
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0848 - 6463100-6463293,6463983-6465144                           29   2.3  
09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223     28   3.0  
09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037     28   3.0  
08_02_0986 + 23328056-23328145,23328289-23329227,23329313-233295...    28   3.0  
09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438     28   4.0  
06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,297...    28   4.0  
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    28   4.0  
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629...    27   9.2  
02_05_0306 - 27741506-27741994                                         27   9.2  
01_07_0194 - 41896831-41896895,41897377-41897440,41898074-418981...    27   9.2  

>06_01_0848 - 6463100-6463293,6463983-6465144
          Length = 451

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 200 CLRIPLGITITQYCAVIVLF 259
           CL+ PLG  +T  CAV+++F
Sbjct: 412 CLQFPLGYLMTNECAVLLIF 431


>09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223
          Length = 437

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 112 QMAFLQNRSISLVDMYIDNSEPSENVGQIHFSLEYD 5
           ++ F +  S ++   Y+DN++PS  V +I  ++ YD
Sbjct: 203 RLDFAKGYSATVAKTYVDNTDPSFVVAEIWSNMRYD 238


>09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037
          Length = 438

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 112 QMAFLQNRSISLVDMYIDNSEPSENVGQIHFSLEYD 5
           ++ F +  S ++   Y+DN++PS  V +I  ++ YD
Sbjct: 203 RLDFAKGYSAAVAKTYVDNTDPSFVVAEIWSNMRYD 238


>08_02_0986 +
           23328056-23328145,23328289-23329227,23329313-23329570,
           23330384-23330692
          Length = 531

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 112 QMAFLQNRSISLVDMYIDNSEPSENVGQIHFSLEYD 5
           ++ F +  S  L  +Y+DN+ P+  VG+I  SL Y+
Sbjct: 202 RLDFAKGYSAPLARIYVDNTNPTFVVGEIWSSLIYN 237


>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
          Length = 617

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  PPAKWIDSEGTPSVSKLCTL*KSLGGGIANESVA 174
           PPA+W  S+  P V+  C +    GG +A  + A
Sbjct: 236 PPAQWRPSQIPPRVAGCCHVGAGFGGVVAGSTAA 269


>06_01_0417 -
           2972877-2973876,2973946-2974851,2975823-2976616,
           2977887-2977977,2978305-2978384
          Length = 956

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 26  DLPDVL*RLRIVNV-HVHQRNGSILKERHLLANCVHFKKVLAEALRTKALPADRG 187
           ++P    +LR   + ++  RN ++ K  HLL N  H + +   A   K LPA  G
Sbjct: 615 EVPFFFPQLRFFQLKYLSLRNTNVSKLPHLLGNLKHLETLDIRATLIKKLPASAG 669


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 10  TPTRSGSARRSLTAPNCQCTCPPAKWIDSEGTPSVS 117
           TP R+G A  SL       T  P +  D++GTP+ S
Sbjct: 298 TPGRAGGATPSLKRNRWDETPTPGRMADADGTPAPS 333


>02_05_0853 +
           32261705-32261794,32261895-32262027,32262117-32262928,
           32263020-32263271
          Length = 428

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 112 QMAFLQNRSISLVDMYIDNSEPSENVGQIHFSLEY 8
           ++ F +  S  +  +YID +EPS  V +I  SL Y
Sbjct: 201 RLDFAKGYSADVAKIYIDATEPSFAVAEIWTSLAY 235


>02_05_0306 - 27741506-27741994
          Length = 162

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 94  NRSISLVDMYIDNSEPSENVGQ 29
           NRS S +D YI+N +P  ++ Q
Sbjct: 123 NRSYSHIDQYINNLQPGGSISQ 144


>01_07_0194 -
           41896831-41896895,41897377-41897440,41898074-41898195,
           41898304-41898433,41899659-41899751
          Length = 157

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 74  HQRNGSILKERHLLANCVHFKKVLAEALRTKALPADR 184
           H RNG   + R LL +C+  +    +AL  K    D+
Sbjct: 97  HYRNGDYPRSRQLLEHCLEIQPGWGQALSLKKTVEDK 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,658,649
Number of Sequences: 37544
Number of extensions: 198329
Number of successful extensions: 442
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)