Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F07f
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)                    29   1.3  
SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)                     29   2.3  
SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)                    28   3.1  
SB_25592| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8)           27   7.2  
SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  

>SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)
          Length = 1040

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 91  DSEGTPSVSKLCTL*KSLGGGIANESVARGSRLSLILLTYTIR 219
           DS  TP + K+ T    L   +A ES+   SR +L+   Y +R
Sbjct: 502 DSLATPHIDKIATEGAKLTHNLAGESICTPSRAALLTGRYPVR 544


>SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 40  SLTAPNCQCTCPPAKWIDSEGTPSVSK 120
           +L+AP   C  P  +WI SE  PS  +
Sbjct: 53  TLSAPGTNCRVPSPRWITSELAPSYER 79


>SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)
          Length = 177

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 151 GIANESVARGSRLSLILLTYTIRYYNHTILCRDSAIQL 264
           G+ N  V  GSR+ L+LLT     YN  + C DS + L
Sbjct: 122 GLYNTRVTCGSRMYLVLLTVLQGLYNTRVTC-DSRMYL 158


>SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)
          Length = 400

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 151 GIANESVARGSRLSLILLTYTIRYYNHTILC 243
           G+ N  V  GSR+ L+LLT     YN  I C
Sbjct: 52  GLYNTRVTCGSRMYLVLLTVLPGLYNTRITC 82



 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 151 GIANESVARGSRLSLILLTYTIRYYNHTILCRDSAI 258
           G+ N  V   SR+ L+LLT  +  YN  + C DS +
Sbjct: 290 GLYNTRVTCDSRMYLVLLTVLLGLYNTGVTC-DSCL 324


>SB_25592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 3   KSYSNEKWICPTFSDGSELSMYMSTS 80
           +SY ++ W+CPT   G+ + + +ST+
Sbjct: 475 QSYPSDMWVCPTNKMGAFVQLRLSTT 500


>SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8)
          Length = 414

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 151 GIANESVARGSRLSLILLTYTIRYYNHTILCRDSAI 258
           G+ N  V   SR+ L+LLT  +  YN  + C DS +
Sbjct: 169 GLYNTRVTCDSRMYLVLLTVLLGLYNTGVTC-DSCL 203


>SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 887

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 28  SARRSLTAPNCQCTCP-PAKWIDS 96
           S  R L  P CQC+ P PAK I++
Sbjct: 47  SQERVLVCPTCQCSVPVPAKGIEA 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,540,550
Number of Sequences: 59808
Number of extensions: 235932
Number of successful extensions: 502
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)