Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    28   0.97 
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    27   1.7  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   3.0  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   3.0  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    26   3.0  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   5.2  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   9.0  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   9.0  

>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 382 PIPRNLKKISPVPEPRS-NYTPARKISPIQNLNKS 483
           P+P N K    VP+ RS +YTP R     ++L  S
Sbjct: 542 PLPSNFKDKGHVPQQRSVSYTPKRSSDTSESLQPS 576


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 331 NSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKS 483
           N+ +++H + + N+R+RP   N    SP  E   N +PA  +S + +L  S
Sbjct: 272 NAHWVVHNEGNRNRRERPCRSN--GSSPTSESALN-SPASSVSSLPSLGAS 319


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 412 PVPEPRSNYTPARKISPIQNLNKSPVKGNQE 504
           P+P      TP ++  P  ++ K  V GN E
Sbjct: 580 PLPSSNDEQTPVKETIPFLHIRKKSVDGNWE 610


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 391 RNLKKISPVPEPRSNYTPARKISPIQNLNKSP 486
           RNL   +  P+   N+ PA + SP+   ++SP
Sbjct: 335 RNLTVRAGTPQSSPNFNPAMRRSPVGAASRSP 366


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +1

Query: 316 ARKQENSDF---ILHPDPSWNQRKRPIPRNLKKISPVPEPRSNY 438
           AR Q N D    ++H +PSW  +   I    + +  + E + +Y
Sbjct: 192 ARIQPNEDVQSVVVHSNPSWKNKVEQIKNESRLVRKIQELKKSY 235


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 328 LVYVPSQHCDCVGLLLFARLNY*EVSQLFQLSP 230
           ++ V + HCD V   L  +L   E  ++  LSP
Sbjct: 270 IIAVTNTHCDIVTSFLLKKLQILEAPKVIDLSP 302


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 364 WNQRKRPIPRNLKKISPVPEPRSNYTPARKISP 462
           W ++ R + +++KK  P  E  ++ T +RK  P
Sbjct: 432 WREQYRKMSKSIKKPEPSKEREASNTTSRKGVP 464


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 993

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 18 LIKFNFNTAYLNSIMDF 68
          L KFNF TA+L +I+ F
Sbjct: 3  LFKFNFTTAFLFTILAF 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,087
Number of Sequences: 5004
Number of extensions: 45380
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)