Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307F06f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 31 0.44
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 30 1.0
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_39495| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_28720| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_45061| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_9567| Best HMM Match : CASP_C (HMM E-Value=2.8e-07) 29 1.8
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 29 2.3
SB_1657| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_53197| Best HMM Match : TP2 (HMM E-Value=5.8) 28 4.1
SB_50134| Best HMM Match : Sorting_nexin (HMM E-Value=6.3) 28 4.1
SB_23367| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 28 4.1
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04) 28 5.4
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 27 7.1
>SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 701
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 310 VKARKQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSN 435
VK QE + I+ P P + P PR K PVP PR +
Sbjct: 234 VKQMAQEYEENIIPPPPEFLGTAVPAPRTYKPRPPVPTPRKS 275
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 346 LHPDPSWNQRKRPIPRNLKKISPVPE--PRSNYTPARKISPIQNLNKSPVKGNQEPVRN 516
L P+PS N P + +P P P ++ P+ +SP N NK+ +G + N
Sbjct: 625 LSPNPSPNPSTSPYRNHSSNTNPNPSLGPNPSHNPSFSLSPNPNQNKTQGEGERATTMN 683
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 349 HPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQN--LNKSPVKGNQEPVRN 516
+P P+ + P P + P P P SN + +PI N ++ SP+ N P N
Sbjct: 490 NPSPNPSSDPSPNPSSNPSSDPSPNPSSNPSSEPSPNPISNPSISTSPI-SNPHPSSN 546
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 355 DPSWNQRKRPIPRNLKKISPVPEPRSNY-TPARKISPIQNLNKS-PVKGNQEPV 510
D S + R + +K SP P PRS+ T +RK+S + S P G Q PV
Sbjct: 344 DQSSHSSPRNSRNSSRKSSPKPSPRSSRPTSSRKLSRKSSRKSSRPTSGQQSPV 397
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 412 PVPEPRSNYTPARKISPIQNLNKSPVKG 495
P+ EP Y P ++ P + LN+ P+KG
Sbjct: 344 PIKEPYHVYEPGDQVLPPEELNEEPLKG 371
>SB_39495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +1
Query: 256 LLNNLDEQTGAALRNHNVVKARKQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSN 435
L + + Q+ H + K+ K EN +L RNL + SP PR +
Sbjct: 45 LSSEMSHQSKTHANTHYLKKSPKGENQKTMLKIPVGGTLGALSSVRNLSQPSPAKRPRPS 104
Query: 436 YTPARKISP 462
+ A KI+P
Sbjct: 105 RSKANKINP 113
>SB_28720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 376 KRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSPVKGNQEP 507
KR +P+ K + P E ++ T +SP++ +N+ + EP
Sbjct: 495 KRTVPKTAKDVLPPEETKTEVTTKEIVSPVKEVNELHREPETEP 538
>SB_45061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +1
Query: 256 LLNNLDEQTGAALRNHNVVKARKQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSN 435
L + + Q+ H + K+ K EN +L RNL + SP PR +
Sbjct: 45 LSSEMSHQSKTHANTHYLKKSPKGENQKTMLKIPVGGTLGALSSVRNLSQPSPAKRPRPS 104
Query: 436 YTPARKISP 462
+ A KI+P
Sbjct: 105 RSKANKINP 113
>SB_9567| Best HMM Match : CASP_C (HMM E-Value=2.8e-07)
Length = 434
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 259 LNNLDEQTGAALRNHNVVKARKQENSDFILHPDPSWNQRKR--PIPRNLKKISPVPEPRS 432
L NL+ + G++LR+ +R + L P ++NQR + P +++S P P +
Sbjct: 272 LRNLELEAGSSLRDDEAAVSRYSSQYEQRLDPFAAFNQRGKSYPFAAFNQRVSLTPLPPN 331
Query: 433 NYTPARKISPIQNLNKSP 486
+ P Q +P
Sbjct: 332 QRVSLTHLPPNQRGKSNP 349
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/62 (20%), Positives = 27/62 (43%)
Frame = +1
Query: 307 VVKARKQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSP 486
V + ++ E+ + + P P ++RP R K + P E + TP + + + P
Sbjct: 119 VTEVQEIEHEEIYVTPKPKTTVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRP 178
Query: 487 VK 492
+
Sbjct: 179 TE 180
>SB_1657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 217 MAWFADLAGKAETLLNNLDEQTGAAL 294
M+WF++LA KAE+LL +D L
Sbjct: 1 MSWFSELAVKAESLLEKVDNTAANVL 26
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 343 ILHPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSPV 489
IL + +W + + + K +PV SN + ++P +NL+ P+
Sbjct: 537 ILSGNSTWKRNNASVMSEINKPAPVENQGSNIEIGKLVTPTRNLSGMPM 585
>SB_53197| Best HMM Match : TP2 (HMM E-Value=5.8)
Length = 217
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 339 FYLTSRPFLEPKKKANTTKFKENFTRSRATFKLHSCSKDFSYTEFE 476
F+ S+ L +++ T+K T R+T +LH CS D +T+F+
Sbjct: 146 FFSVSKEMLASRRR-QTSKAWRTTTHGRSTEQLHHCS-DCYFTQFD 189
>SB_50134| Best HMM Match : Sorting_nexin (HMM E-Value=6.3)
Length = 310
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 352 PDPSWNQRKRPIPRNLKKISPVPEPRSNY 438
P P+ Q+ P PRN ++ P P P+ +
Sbjct: 179 PKPAHRQKPVPAPRNKPELKPKPVPKPRF 207
>SB_23367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 400 KKISPVPEPRSNYTPARKISPIQNLNKSPVKGNQEPVR 513
K S +P+ +S++ RKIS ++ +NKSP K VR
Sbjct: 56 KHTSSIPDWKSSHAE-RKISVVERVNKSPHKWQDFKVR 92
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +1
Query: 235 LAGKAETLLNNLDEQTGAALRNHNVVKARKQENSDFILHPDPSWNQRKRPIPRNLKKISP 414
LA +AE++LNN+++ T + VVK + Q + + I H ++ + + +N K+S
Sbjct: 326 LADEAESILNNMEDTTEQIFQEKKVVK-KLQVDEEEIKH---RISELQNQLAKNKSKLSE 381
Query: 415 VPE 423
E
Sbjct: 382 TQE 384
>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
Length = 1223
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 250 ETLLNNLDEQTGAALRNHNV-VKARKQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEP 426
E L D + A+ + HN + A +E++D P KRP N ++ P
Sbjct: 652 EQLNMTQDNKNKASEKPHNESLNAGHEESNDLKSSPLKRGGTTKRPAVGNTVRLPVRTSP 711
Query: 427 RSNYTPARKISPIQNLNKSPVKGNQ 501
+ PA + + N+ K KG+Q
Sbjct: 712 ETVPNPAGQGNVFSNIQKMLDKGDQ 736
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 355 DPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSPVKGNQEPVR 513
D WN PR + K V EP + +PA+K + K KG+ V+
Sbjct: 445 DIFWNYTMHRNPRRVSKKKRVAEPIKSRSPAKKQKKEKVPRKKKAKGDGPVVK 497
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,410,614
Number of Sequences: 59808
Number of extensions: 315832
Number of successful extensions: 859
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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