Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307F06f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33320.1 68415.m04084 C2 domain-containing protein low simila... 34 0.067
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 31 0.36
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 31 0.36
At1g44010.1 68414.m05077 hypothetical protein 31 0.47
At1g55640.1 68414.m06369 prenylated rab acceptor (PRA1) family p... 30 0.82
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH... 29 1.9
At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains P... 29 2.5
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 29 2.5
At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)... 28 3.3
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 4.4
At5g05160.1 68418.m00549 leucine-rich repeat transmembrane prote... 27 5.8
At4g32490.1 68417.m04625 plastocyanin-like domain-containing pro... 27 5.8
At4g28610.1 68417.m04091 myb family transcription factor, putati... 27 5.8
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 27 5.8
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 27 5.8
At5g14130.1 68418.m01653 peroxidase, putative identical to perox... 27 7.7
At3g56470.1 68416.m06280 F-box family protein similar to F-box p... 27 7.7
At3g45755.1 68416.m04945 hypothetical protein 27 7.7
At1g54460.1 68414.m06212 expressed protein 27 7.7
At1g18190.1 68414.m02262 expressed protein similar to golgin-84 ... 27 7.7
>At2g33320.1 68415.m04084 C2 domain-containing protein low
similarity to splicing coactivator subunit SRm300 [Homo
sapiens] GI:6649242; contains Pfam profile PF00168: C2
domain
Length = 602
Score = 33.9 bits (74), Expect = 0.067
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +1
Query: 298 NHNVVKAR--KQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSNY-TPARKISPIQ 468
NHNV++ R +Q DFI N R R PR + P P +Y + + SP
Sbjct: 301 NHNVLRPRSERQHEPDFIDQSPFRSNDRSRKTPRRSTPMIEKPRPPRDYDRTSSRASPYL 360
Query: 469 NLNKSPVKGN 498
+ + +P++ N
Sbjct: 361 SRHGTPLRSN 370
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 31.5 bits (68), Expect = 0.36
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +1
Query: 271 DEQTGAALRNHNVVKARKQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPAR 450
D G+ R R++ + D+ P +++ K P P +K S+Y AR
Sbjct: 147 DRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGRRSSDYGRAR 206
Query: 451 KISPIQNLNKSPVK 492
SP + ++SP++
Sbjct: 207 ARSPGYDRSRSPIQ 220
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 31.5 bits (68), Expect = 0.36
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +1
Query: 271 DEQTGAALRNHNVVKARKQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPAR 450
D G+ R R++ + D+ P +++ K P P +K S+Y AR
Sbjct: 173 DRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGRRSSDYGRAR 232
Query: 451 KISPIQNLNKSPVK 492
SP + ++SP++
Sbjct: 233 ARSPGYDRSRSPIQ 246
>At1g44010.1 68414.m05077 hypothetical protein
Length = 227
Score = 31.1 bits (67), Expect = 0.47
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 412 VKFSLNFV-VLAFFFGSRKGLDVR*NRSFLVYVPSQHCDCVGLLLFARLN 266
++F LN V ++A F + D SFLV++ C CV +LL +N
Sbjct: 60 IEFVLNIVQIVAAFVVVTRAKDEHPGTSFLVWIIGYTCGCVAILLIQFIN 109
>At1g55640.1 68414.m06369 prenylated rab acceptor (PRA1) family
protein weak similarity to prenylated Rab acceptor 1
(PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
PF03208: Prenylated rab acceptor (PRA1)
Length = 187
Score = 30.3 bits (65), Expect = 0.82
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 516 ISYWLLIAFYRRFIQILYRRNLSSRSVI 433
++ WLL+ FYR +LY R++S R ++
Sbjct: 100 VAMWLLLYFYRDHPLVLYGRHISDRVIV 127
>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
(MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
thaliana}
Length = 1324
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +1
Query: 352 PDPSWNQRKRPIPRNLKKISPVPEPR-SNYTPARKISPIQNL-NKSPVKGNQEP 507
P PS + +K P N SP P P TP +P NL +SP G P
Sbjct: 39 PSPSLSNKKTPKSNNPNPKSPSPSPSPPKKTPKLNPNPSSNLPARSPSPGPDTP 92
>At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 783
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 397 LKKISPVPEPRSNYTPARKISPIQNLNKSPVKGNQEPV 510
L K+SP+P+ + T R +S N+N S + E V
Sbjct: 461 LHKVSPLPDFQEKVTQKRNLSTRNNINSSEKSSSYEAV 498
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +1
Query: 292 LRNHNVVKARKQENSDF---ILHPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISP 462
LR++ + A ++ SD I+ PS ++ + P+ S PR + + + SP
Sbjct: 349 LRSNGISDAASEQISDRQPDIVDDHPSKSRSRSLSPKRTVSKSTSVSPRRSQSKSPSSSP 408
Query: 463 IQNLNKSPVKGNQEPVRN 516
N +SP KG+++ V+N
Sbjct: 409 RWNGGRSPAKGSRQ-VKN 425
>At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)
nearly identical to SH3 domain-containing protein 1
[Arabidopsis thaliana] GI:16974676; contains Pfam
profile PF00018: SH3 domain
Length = 439
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 379 RPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKS 483
+P P++ K SP E +SN+ K SP + + KS
Sbjct: 316 KPSPKDEMKSSPQEETKSNHQKEIKSSPQEEIKKS 350
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 382 PIPRNLKKISPVPEPRSNYTPARKISPIQN 471
P P + SP+P P + TP ISP QN
Sbjct: 547 PSPSSPTPSSPIPSPPTPSTPPTPISPGQN 576
>At5g05160.1 68418.m00549 leucine-rich repeat transmembrane protein
kinase, putative
Length = 640
Score = 27.5 bits (58), Expect = 5.8
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Frame = +1
Query: 226 FADLAGKAETLLNNLDEQTGAALRNHNVVKARKQENSDFILHPDPSWNQRKRPIPRNLKK 405
+ L+G + L NL + T L+N++ + + + S+N PIP +LKK
Sbjct: 157 YNSLSGNIPSGLRNLSQITVLYLQNNSFDGPIDSLDLPSVKVVNLSYNNLSGPIPEHLKK 216
Query: 406 I--------SPVPEPRSNYTPARKISPIQNLNKSPVKGNQEPVR 513
S + P N ISP NL + P+ N PVR
Sbjct: 217 SPEYSFIGNSLLCGPPLNACSGGAISPSSNLPR-PLTENLHPVR 259
>At4g32490.1 68417.m04625 plastocyanin-like domain-containing
protein
Length = 221
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 349 HPDPSWNQRKRPIPRNLKKISPVP--EPRSNYTPARKISPIQNLNKSPVKGNQEPVRN 516
HP PS + P+ + L +P+P + S+ P + P + +P G VRN
Sbjct: 140 HPSPSPSPSASPVRKALLSPAPIPVHKALSSPAPTPGVDPSHSEVLAPAPGPAAAVRN 197
>At4g28610.1 68417.m04091 myb family transcription factor, putative
/ phosphate starvation response regulator, putative
(PHR1) contains Pfam profile: PF00249 myb-like
DNA-binding domain; identical to cDNA phosphate
starvation response regulator 1 (phr1 gene) GI:15384675
Length = 409
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 418 PEPRSNYTPARKISPIQNLNKSPVKG 495
PEP +P RK++P++++ +KG
Sbjct: 284 PEPSETGSPERKLTPLEHITSLDLKG 309
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 424 PRSNYTPARKISPIQNLNKSPVKGNQEPVRN 516
P N+ + P+Q+ +KSP+ GN P +N
Sbjct: 330 PIGNWRNSPIDHPLQSFSKSPIFGNLSPTKN 360
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 283 GAALRNHNVVKARKQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSNYTP 444
G+ N+N A E D++ P P P P++L SP PEP +Y P
Sbjct: 41 GSDSTNYNS-PAPSPEPEDYLPLPPPPQTPPPPPPPQSLPPPSPSPEP-EHYPP 92
>At5g14130.1 68418.m01653 peroxidase, putative identical to
peroxidase ATP20a [Arabidopsis thaliana]
gi|1546694|emb|CAA67338
Length = 330
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 339 FYLTSRPFLEP-KKKANTTKFKENFTRSRATFKL--HSC 446
+Y ++ P +E K+A TTKFK+ T + AT ++ H C
Sbjct: 36 YYASTCPSVELIVKQAVTTKFKQTVTTAPATLRMFFHDC 74
>At3g56470.1 68416.m06280 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]
Length = 367
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 270 RRANRSSPTQSQCCEGT*TRKLRFYLTSRPFLEPKKKANTTKFKENFTRSRATFK 434
R A +PT + C T T Y+T + + K+ T+ FK R+ TF+
Sbjct: 149 RMAFSCAPTSTSCLLFTVTSVTWNYITIKTYFANAKEWKTSVFKNRLQRNFNTFE 203
>At3g45755.1 68416.m04945 hypothetical protein
Length = 296
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 44 LLKQYYGFYKQYKIY 88
+LK YYGFYK + IY
Sbjct: 231 MLKGYYGFYKVFGIY 245
>At1g54460.1 68414.m06212 expressed protein
Length = 338
Score = 27.1 bits (57), Expect = 7.7
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Frame = +1
Query: 223 WFADLAGKAETLLNNLDEQTGAALRNHNVVKARKQENSDFILHPDPSWNQRKRPIPRNLK 402
++ L K + L E V + ++N + +P PS+ Q P + LK
Sbjct: 179 FYQKLEEKQKALEAEKRENEKRLKEEQEAVTKQLRKNMAYKANPVPSFYQEGPPPKQPLK 238
Query: 403 KISPVPEPRS-NYTPARKISPIQNLNKSPVKG 495
K P+ P+S N + S N + VKG
Sbjct: 239 KF-PLTRPKSPNLNRRKSCSDTVNASYQEVKG 269
>At1g18190.1 68414.m02262 expressed protein similar to golgin-84
{Homo sapiens} (GI:4191344)
Length = 668
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = +1
Query: 223 WFADLAGKAETLLNNLDEQTGAALRNHNVVKARKQENSDFILHPDPSWNQRKRPIPRNLK 402
W + AET+L LD+Q +LR K K E D + P + L+
Sbjct: 4 WISSKLKAAETILQQLDQQAADSLR-----KDEKSETHDEVFETSPKSGSSPVSLKDQLR 58
Query: 403 K 405
K
Sbjct: 59 K 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,076,997
Number of Sequences: 28952
Number of extensions: 232122
Number of successful extensions: 677
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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