Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307F04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0925 - 12440917-12441560,12441675-12441810 31 0.56
01_01_0134 - 1224084-1224269,1224578-1224662,1224763-1225050,122... 31 0.56
01_01_0017 + 133311-133615,133698-133824,133912-134253 29 2.3
06_01_0900 + 6926600-6927202 28 4.0
07_03_0064 + 12995669-12995904,12996299-12996533,12998223-129983... 28 5.2
05_01_0188 - 1357074-1357098,1357811-1357941,1358572-1358667,135... 28 5.2
11_02_0005 - 7264736-7264753,7265086-7265188,7265487-7265539,726... 27 6.9
05_06_0180 + 26173452-26173692,26174456-26174698,26174796-261750... 27 9.1
02_05_0482 + 29382696-29383251,29383376-29383692 27 9.1
01_05_0433 - 22094784-22095659 27 9.1
>03_02_0925 - 12440917-12441560,12441675-12441810
Length = 259
Score = 31.1 bits (67), Expect = 0.56
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 211 NVFTKGYFVTLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTPPTSAPHTRTCT 44
N++++GY + ++ RG+ S C CA +HRR P A T T T
Sbjct: 53 NLYSQGYGTSTAALSTALFNRGL---SCGSCYELRCAGDHRRSCLPGGATVTVTAT 105
>01_01_0134 -
1224084-1224269,1224578-1224662,1224763-1225050,
1225114-1225334,1225511-1225642,1226218-1226494,
1226722-1226770,1226993-1227088,1227779-1227911,
1228241-1228391,1228484-1228674,1229167-1229382
Length = 674
Score = 31.1 bits (67), Expect = 0.56
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 403 GSTWRPKISKRSTTKHKNGLYRFF 332
GS + PK+ ++STTKH+ G +R F
Sbjct: 338 GSEFSPKLIQKSTTKHRRGWWRQF 361
>01_01_0017 + 133311-133615,133698-133824,133912-134253
Length = 257
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 133 SASECVGCTCAREHRRDTPPTSAPHTRT 50
S+S C + R+ PP APHT T
Sbjct: 6 SSSTASAAACCKSRSRNPPPAPAPHTST 33
>06_01_0900 + 6926600-6927202
Length = 200
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 64 VRRWGACLGGARARTCIRRTRSHSRYILHG 153
VR W + G R +T IRR R R+ HG
Sbjct: 76 VREWSELVAGPRWKTFIRRFRRSPRHHHHG 105
>07_03_0064 +
12995669-12995904,12996299-12996533,12998223-12998384,
12999446-12999566,13000095-13001608
Length = 755
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 408 WEGAEAVSKGGARALGINSSADLWAPFNGRRR 503
+ A AV+ G+ LG+ ++ADL A + GR R
Sbjct: 665 YAAARAVTVAGSPKLGVYAAADLGATWGGRPR 696
>05_01_0188 -
1357074-1357098,1357811-1357941,1358572-1358667,
1358736-1358769,1358867-1358958,1359273-1359332,
1359376-1359435,1360016-1360525,1360645-1360719,
1360809-1361015
Length = 429
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 140 TYSTVINNINKYQQRYKIAFRKNIRSLKCIYFCLAYKKKRIAYLVFYSFSLIINS 304
T TV++ N Y + N+ I F +K KR+AYL Y + +IN+
Sbjct: 35 TTKTVLDPWNPYFPLWPPEIPPNLGLNGAICFIEDWKMKRMAYLASYRSTCVINA 89
>11_02_0005 -
7264736-7264753,7265086-7265188,7265487-7265539,
7265791-7265880,7266093-7266217,7266528-7266753
Length = 204
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 394 RSNLGGKVPKPSARAGRERWG*TPVLIYGRP--LMDAAGLTPL 516
RSN G+VPK + G ERW P +P L +AA L L
Sbjct: 69 RSNSEGQVPKKTTSMGFERWWLPPPPEVKKPRSLYNAASLAYL 111
>05_06_0180 +
26173452-26173692,26174456-26174698,26174796-26175009,
26175115-26175194,26175381-26175502,26175950-26176053,
26176457-26176644,26176725-26176924,26177104-26177331
Length = 539
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -2
Query: 490 LKGAHRSALEFIPSARAPPLLTASAPS---HLGSTWRPKISKRSTTKHK 353
++G HR LE + ++ P TAS PS LGS P SK+S+ K K
Sbjct: 463 IQGYHRELLEQMIASGWKPPPTASEPSRKLRLGSRKAPP-SKKSSMKRK 510
>02_05_0482 + 29382696-29383251,29383376-29383692
Length = 290
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 391 ARSNLGGKVPKPSARAGRERWG 456
+R LG K P P R G+ER G
Sbjct: 39 SRKRLGAKPPSPQRRGGQEREG 60
>01_05_0433 - 22094784-22095659
Length = 291
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 442 APPLLTASAPSHLGSTWRPKISKRSTTKHK 353
APP++ A+APS + S + S STT K
Sbjct: 250 APPIVVAAAPSPVRSVVKASSSSSSTTDAK 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,907,141
Number of Sequences: 37544
Number of extensions: 288493
Number of successful extensions: 973
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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