Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307F04f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05) 32 0.25
SB_4330| Best HMM Match : UVR (HMM E-Value=0.039) 30 1.3
SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7) 29 3.1
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6) 28 4.1
SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92) 28 4.1
SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036) 28 5.4
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 28 5.4
SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4) 28 5.4
SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95) 27 7.1
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.4
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 9.4
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24) 27 9.4
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 27 9.4
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 27 9.4
>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
Length = 322
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 233 NIYTLGI*CFYERLFCNVVDIYLYYLLPWSMYRECERVRRMH 108
N YT+ I C+Y + C V +YL++ L + +ECE H
Sbjct: 158 NTYTILILCYYPAILCIVKPVYLFFGL--GVDKECESCYSFH 197
>SB_4330| Best HMM Match : UVR (HMM E-Value=0.039)
Length = 561
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 517 REESARRRPLKGAHRSALEFIPSARAPPLLTASAPSHLGST-WRPKISKRST 365
RE SAR P+K AH + E SAR P+ TA S S W P K T
Sbjct: 208 RENSARWVPVKTAHVGSRE--NSARWVPVKTAHVGSRENSARWVPNCQKNDT 257
>SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)
Length = 488
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 134 ECERVRRMHVRARAPPRHAPHLR 66
+CE V R H+ R+PP + P L+
Sbjct: 423 QCESVARKHMPRRSPPAYKPQLK 445
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 517 REESARRRPLKGAHRSALEFIPSARAPPLLTASAPS 410
R ++ARR PLK R++L+ P++ P L S+ S
Sbjct: 1332 RTDTARRSPLKTDKRASLKTTPTSSVPSPLCPSSSS 1367
>SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6)
Length = 555
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 394 WRPKISKRSTTKHKNGLYRFFVENVTFYTLAVDDERKTVK 275
+ P K T KH GL+ + ++T + DER+ V+
Sbjct: 174 YEPAAMKAFTQKHSPGLFEMLLSSITREDSRLSDERQAVQ 213
>SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 149 WSMYRECERVRRMHVRARAPPRHAP 75
WSM+ EC + R+ V +R PP +P
Sbjct: 146 WSMFNECFPLIRVKVSSRDPPYMSP 170
>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
Length = 806
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 118 VGCTCAREHRRDTPPTSAPHTRTCTPRTLHLTS 20
V + + ++RR +P + +PH+ T TP +TS
Sbjct: 653 VSSSASSKNRRSSPVSRSPHSTTGTPNATGITS 685
>SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 149 WSMYRECERVRRMHVRARAPPRHAP 75
WSM+ EC + R+ V +R PP +P
Sbjct: 12 WSMFNECFPLIRVKVSSRDPPYMSP 36
>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 1136
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 149 TVINNINKYQQRYKIAFRKNIRSLKCI 229
T++ + N+Y Q Y+ F SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -2
Query: 256 FFFVSQTKIYTL*GSNVFTKGY-FVTLLI--FIY-IIYYRGVCIESASECVGCTCAREHR 89
FF + T I T +V +GY ++ L + +Y ++YY G S +E + HR
Sbjct: 355 FFICAITMIVTY---SVLLRGYKYMELSLDKLVYNLVYYFGATKYSVTEIMKIVLCSIHR 411
Query: 88 RDTPPTSAPHTRTCTPR 38
R+ + H +C PR
Sbjct: 412 RNVYVSLYIHLLSCAPR 428
>SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 385 KISKRS-TTKHKNGLYRFFVENVTFYTLAVDDER-KTVK 275
KIS +S T KHK L R ++ FYT D + KT+K
Sbjct: 34 KISTKSKTAKHKKDLSRLQKKDPEFYTFLQDKSKSKTIK 72
>SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4)
Length = 263
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 149 TVINNINKYQQRYKIAFRKNIRSLKCI 229
T++ + N+Y Q Y+ F SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205
>SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95)
Length = 221
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 152 VINNINKYQQRYKIAFRKNIRSLKCI 229
++ + N+Y+Q Y+ F SLKCI
Sbjct: 1 MVTSENEYEQEYRARFEIKTNSLKCI 26
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 512 GVSPAASIKGRP*ISTGVYPQRSRPALADGFGTFPPRF 399
G PA SI P T YP R P + G G PP++
Sbjct: 1855 GSIPAQSIPVAPSRGTRQYPPRGAPMMHRGRGHPPPQY 1892
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 333 KNLYSPFLCFVVERLEIFGRQVEPRWEGAE--AVSKGGARALGINSS 467
K L F + R+EI+GR+V P ++ A ++ G R+ INSS
Sbjct: 349 KFLVMAFFSKICARVEIYGREVSPCENPSDRGATAEIGMRSGNINSS 395
>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1980
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 124 ECVG--CTCAREHRRDTPPTSAPHTRTCTPRTLHLTS 20
+C G C C +H ++TP T TC P ++H+ S
Sbjct: 530 QCYGKECWCVDKHGQETPGTRTTGLITC-PASVHVLS 565
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 466 LEFIPSARAPPLLTASAPSHLGSTW 392
LE +P + P LTA AP H+ W
Sbjct: 2433 LESVPEGLSAPRLTALAPRHIKIQW 2457
>SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24)
Length = 440
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 457 IPSARAPPLLTASAPSH-LGSTWRPKISKRSTTKHK 353
+ SA +PPLLT A H L + +PK + + H+
Sbjct: 94 VTSATSPPLLTTHAHHHSLQTVTKPKARRTKPSSHQ 129
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 514 EESARRRPLKGAHRSALEFIPSARAPPLLTASAPSHL 404
E +AR PL+ A +L P A+ P +T + P HL
Sbjct: 420 ETAARALPLREAVSLSLMPTPPAKIAPNITRTVPPHL 456
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 457 IPSARAPPLLTASAPSH-LGSTWRPKISKRSTTKHK 353
+ SA +PPLLT A H L + +PK + + H+
Sbjct: 1641 VTSATSPPLLTTHAHHHSLQTVTKPKARRTKPSSHQ 1676
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,812,421
Number of Sequences: 59808
Number of extensions: 330080
Number of successful extensions: 1001
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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