Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0597 + 30245455-30245767,30246693-30246760,30246851-302469...    33   0.18 
05_03_0067 + 7986527-7986915,7987499-7987606,7987781-7988210           29   1.7  
09_04_0502 - 18163192-18163435,18164000-18164154,18164243-181644...    29   2.3  
06_01_1175 - 10094144-10094387,10094573-10094730,10094851-100950...    29   2.3  
07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107           29   3.0  
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591...    29   3.0  
10_01_0242 + 2534316-2535482                                           28   5.2  

>02_05_0597 +
           30245455-30245767,30246693-30246760,30246851-30246939,
           30247047-30247212,30247296-30247585,30247692-30247896,
           30248013-30248170,30248352-30248595
          Length = 510

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +2

Query: 29  KGVLTERQLIVELLDLYKSLPCLWDPIHS 115
           K +L +R+LIVEL+D Y S   LWD   S
Sbjct: 436 KTILLDRKLIVELVDQYNSGSMLWDEFSS 464


>05_03_0067 + 7986527-7986915,7987499-7987606,7987781-7988210
          Length = 308

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
 Frame = +2

Query: 116 QYNNKESREAAXXXXXXXXXXXXXDASIDVVKKKIEHMRATYRREYR----KVVASLVAG 283
           +Y N  S+  A               +I+    +  + R +Y+ E      K V  L + 
Sbjct: 132 RYTNSTSQITAVPHYDGHQWRKYGQKNINNSNHQRSYYRCSYKHEQNCKATKTVQQLDSA 191

Query: 284 GKKHVPSLWYYDHLTFLNNVNKFPLRPLVTSTLQS 388
           G+  + ++ YY   T   N++  PL  + TST QS
Sbjct: 192 GETIMYTVVYYGQHTCKTNMSNAPLHVVETSTTQS 226


>09_04_0502 -
           18163192-18163435,18164000-18164154,18164243-18164447,
           18164530-18164819,18164845-18164853,18164920-18165085,
           18165170-18165258,18165365-18165432,18165843-18166164
          Length = 515

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 29  KGVLTERQLIVELLDLYKSLPCLWDPIHS 115
           K VL +R+LIVEL+D YK+    W+   S
Sbjct: 441 KTVLLDRKLIVELVDQYKNGTMRWNHFSS 469


>06_01_1175 -
           10094144-10094387,10094573-10094730,10094851-10095055,
           10095184-10095473,10095605-10095770,10095872-10095960,
           10096060-10096127,10097185-10097473
          Length = 502

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 29  KGVLTERQLIVELLDLYKSLPCLWD 103
           K +L +R+LIVEL+D Y +    WD
Sbjct: 428 KTILLDRKLIVELVDQYNNSSLRWD 452


>07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107
          Length = 346

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 359 AKGIC*HYSRMLNDRSTIMRVRAFCHRQQA 270
           A  +C H+S +L D   + R RAF HR++A
Sbjct: 31  ASAVCKHWSHLLADAGFLRRYRAF-HRRRA 59


>03_06_0327 -
           33158131-33158315,33158586-33158639,33159149-33159180,
           33159275-33159369,33159466-33159539,33159643-33159778,
           33159874-33159937,33160017-33160079,33160160-33160299,
           33160487-33160627,33160747-33160868,33160947-33161112,
           33161194-33161313,33161580-33161651,33161787-33161843,
           33162036-33162152,33162231-33162369,33162794-33162900,
           33162972-33163081,33163172-33163305,33163397-33163546,
           33163635-33163840,33166123-33166818
          Length = 1059

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 338 YSRMLNDRSTIMRVRAFCHRQQAKRQPFCIHVYKLH 231
           YS+ LND+     +RA C R Q + Q   IH   LH
Sbjct: 524 YSKKLNDKQVTNILRATCQRPQQREQ--SIHEMVLH 557


>10_01_0242 + 2534316-2535482
          Length = 388

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 407 LHPPWHRIATCLLPMVAKGIC*HYSRMLNDRSTIMRVRAF 288
           LH P H   TCLL   A  +C H+  ++ D   I R RAF
Sbjct: 15  LHLPKH--PTCLLR--ASLVCKHWRYLIRDNKFIKRFRAF 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,023,804
Number of Sequences: 37544
Number of extensions: 223685
Number of successful extensions: 487
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)