Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   1e-04
SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0)                       34   0.082
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   2.7  
SB_50171| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)              26   2.9  
SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1)                    29   3.1  
SB_27421| Best HMM Match : Peptidase_M35 (HMM E-Value=7.1)             28   5.4  
SB_8263| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-19)                  27   7.1  
SB_36653| Best HMM Match : ACBP (HMM E-Value=3.6)                      27   9.4  
SB_23735| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)                 27   9.4  
SB_29202| Best HMM Match : SH3_1 (HMM E-Value=3.9e-12)                 27   9.4  

>SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
 Frame = +2

Query: 29  KGVLTERQL---IVELLDLYKSLPCLWDPIHSQYNNKESREAAXXXXXXXXXXXXXDASI 199
           +GV   R L   + +L+DL++  PCLWD  + +Y  K +R+ A             D   
Sbjct: 25  RGVRVRRWLSHEVEQLIDLFEERPCLWDVSNKEYYQKGNRQRAEEEIAEQMGITLND--- 81

Query: 200 DVVKKKIEHMRATYRREYRKVVASLVAGGKKHVPSLWYYDH-LTFLNNV 343
             VK KI+ +R+   RE  K+  S     + +VP +W + H L FL +V
Sbjct: 82  --VKSKIKSLRSQLGREIYKIRTS-----ENYVP-IWIFWHKLQFLADV 122


>SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 968

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 29  KGVLTERQLIVELLDLYKSLPCLWDPIHSQYNNKESREA 145
           KG   +RQ I  L+  Y+S  CLW   + +Y N+  +EA
Sbjct: 821 KGEELDRQEIERLIVSYESRKCLWGIFNKEYTNRHRKEA 859


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +2

Query: 95   LWDPIHSQYNNKESREAAXXXXXXXXXXXXXDASIDVVKKKIEHMRATYRREYRK 259
            LW   H   NN   +E               +A  D V++ ++  R  +R+EY K
Sbjct: 1648 LWQRNHDNNNNNHEKEQNIESIKDKLWAEFEEAKEDSVREALDSEREKWRKEYEK 1702


>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 25.8 bits (54), Expect(2) = 2.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 54  LLLNY*TFTKVFPAFGIQFIASTIIKNRVRQLMNYY 161
           +L++Y     +   FG   IA  I+K R+ Q ++YY
Sbjct: 773 ILVSYLCIVIITALFGNALIALVIVKKRLLQNVHYY 808



 Score = 21.4 bits (43), Expect(2) = 2.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 273 LLPVAKSTYPHYG 311
           LL + ++ YPHYG
Sbjct: 830 LLRIDRNWYPHYG 842


>SB_50171| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)
          Length = 335

 Score = 25.8 bits (54), Expect(2) = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 54  LLLNY*TFTKVFPAFGIQFIASTIIKNRVRQLMNYY 161
           +L++Y     +   FG   IA  I+K R+ Q ++YY
Sbjct: 20  ILVSYLCIVIITALFGNALIALVIVKKRLLQNVHYY 55



 Score = 21.4 bits (43), Expect(2) = 2.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 273 LLPVAKSTYPHYG 311
           LL + ++ YPHYG
Sbjct: 77  LLRIDRNWYPHYG 89


>SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1)
          Length = 159

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -1

Query: 257 FCIHVYKLHACVLFSFLQHL*MHLHITLCISP--VIIHKLPHAILYYCTGYEL 105
           +C+  Y +  CV    + +     H+T C++P  V     P+ + YY T Y +
Sbjct: 24  YCMTPYHVPDCVTPYHVTYYVTPYHVTYCVTPYHVTYCVTPYHVTYYVTPYHV 76


>SB_27421| Best HMM Match : Peptidase_M35 (HMM E-Value=7.1)
          Length = 556

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +2

Query: 206 VKKKIEHMRATYRREYRKVVASLVAGGKKHVPSLWYYDHLTFLNNVNKFPLRPLVTST 379
           +K  + H       E +  +  L+ G KK  PS     H T   NV KFP+RPL+  T
Sbjct: 247 LKLDLNHDAFVLMSENQNEIGRLM-GAKKASPSEEGVVHSTAPENV-KFPVRPLIIKT 302


>SB_8263| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-19)
          Length = 327

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 217 FLFYNIYRCIFI*LSVFLP**FISCLTRF 131
           + FY IY+ +FI  SV  P  +++C+ RF
Sbjct: 244 YYFYYIYQTLFIFNSVVNPVVYLTCVKRF 272


>SB_36653| Best HMM Match : ACBP (HMM E-Value=3.6)
          Length = 206

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/74 (21%), Positives = 32/74 (43%)
 Frame = +2

Query: 65  LLDLYKSLPCLWDPIHSQYNNKESREAAXXXXXXXXXXXXXDASIDVVKKKIEHMRATYR 244
           L +  ++ P L+D     + +K  +E A               S+D  K+K  ++R  Y 
Sbjct: 21  LAEAVRAFPVLYDKSIKDFKDKNKKENAWKQVAEQAG-----CSVDEAKRKFLNLRNRYS 75

Query: 245 REYRKVVASLVAGG 286
           ++  K+ +   +GG
Sbjct: 76  KDKNKIKSKSKSGG 89


>SB_23735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 375 LVTNGRKGNLLTLFKNVK*S*YHNEGTCFLPPATSEATT 259
           L TN +  N++T F N K + + N G   +PP  + A T
Sbjct: 39  LSTNTQISNVVTSFPNQKENGWTNSGVVDMPPPRNTAQT 77


>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1127

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 197 IDVVKKKIEHMRATYRREYRKVVASLVAGGKKHVPSLW 310
           ID + +  +   + + +EYR  +A   + G+ H+PSL+
Sbjct: 375 IDNLNRTPKFRASPWNQEYRDFLAERSSTGRPHIPSLY 412


>SB_29202| Best HMM Match : SH3_1 (HMM E-Value=3.9e-12)
          Length = 364

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 375 LVTNGRKGNLLTLFKNVK*S*YHNEGTCFLPPATSEATT 259
           L TN +  N++T F N K + + N G   +PP  + A T
Sbjct: 278 LSTNTQISNVVTSFPNQKENGWTNSGVVDMPPPRNTAQT 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,254,231
Number of Sequences: 59808
Number of extensions: 270738
Number of successful extensions: 601
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)