Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    30   1.2  
U80445-1|AAB37794.1|  855|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z80215-10|CAB02271.3|  175|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z49907-11|CAF31469.1|  844|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z49907-10|CAC42250.1|  875|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z49907-9|CAA90092.1|  880|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z48367-8|CAF31471.1|  844|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z48367-7|CAC42266.1|  875|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z48367-6|CAA88325.1|  880|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF319613-1|AAG49523.1|  880|Caenorhabditis elegans CLC-type chlo...    27   8.1  
AF173171-1|AAF13164.1|  844|Caenorhabditis elegans CLC chloride ...    27   8.1  

>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -2

Query: 241 ISCTHVFYFLFYNIYRCIFI*LSVFLP**FISCLTRFFIIVLAMNWIPKAGKTF 80
           ++C  VF F FY+++  + I   VF    F+  + RFFI      +IP +GK F
Sbjct: 80  LTCISVF-FCFYSLFSSLCIITQVFHVLLFVLAVERFFIY-----FIPSSGKLF 127


>U80445-1|AAB37794.1|  855|Caenorhabditis elegans Hypothetical
           protein C50F2.3 protein.
          Length = 855

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -1

Query: 191 HLHI-TLCISPVIIHKLPHAILYYCTGY-ELDPKGREDFCKGLIIQQ*VDVPSELLCPLL 18
           H+ I TL I  +  H LP   +     Y +++PK RED+ + LI +  +D  ++ L  L+
Sbjct: 152 HMRIWTLYIGFLTSHDLPETTIRVYRRYLKMNPKAREDYVEYLIERDQIDEAAKELTTLV 211


>Z80215-10|CAB02271.3|  175|Caenorhabditis elegans Hypothetical
           protein C36B1.6 protein.
          Length = 175

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 277 NKRSDNLSVFTS-ISCTHVFYFLFYNIYRCIFI 182
           N   D L  +TS I C   F+ +FY+I  CIFI
Sbjct: 112 NNECDQLLYWTSFIFCA--FFIIFYSITTCIFI 142


>Z49907-11|CAF31469.1|  844|Caenorhabditis elegans Hypothetical
           protein B0491.8c protein.
          Length = 844

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 283 TGNKRSDNLSVFTSISCTHVFYFLFYNIYRCIFI*LSVFLP 161
           TG    D +S+FTS+   ++ YF+   I   I +   VF+P
Sbjct: 389 TGGSEGD-VSIFTSLVLYYILYFVLVAICISINVPAGVFVP 428


>Z49907-10|CAC42250.1|  875|Caenorhabditis elegans Hypothetical
           protein B0491.8b protein.
          Length = 875

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 283 TGNKRSDNLSVFTSISCTHVFYFLFYNIYRCIFI*LSVFLP 161
           TG    D +S+FTS+   ++ YF+   I   I +   VF+P
Sbjct: 420 TGGSEGD-VSIFTSLVLYYILYFVLVAICISINVPAGVFVP 459


>Z49907-9|CAA90092.1|  880|Caenorhabditis elegans Hypothetical
           protein B0491.8a protein.
          Length = 880

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 283 TGNKRSDNLSVFTSISCTHVFYFLFYNIYRCIFI*LSVFLP 161
           TG    D +S+FTS+   ++ YF+   I   I +   VF+P
Sbjct: 420 TGGSEGD-VSIFTSLVLYYILYFVLVAICISINVPAGVFVP 459


>Z48367-8|CAF31471.1|  844|Caenorhabditis elegans Hypothetical
           protein B0491.8c protein.
          Length = 844

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 283 TGNKRSDNLSVFTSISCTHVFYFLFYNIYRCIFI*LSVFLP 161
           TG    D +S+FTS+   ++ YF+   I   I +   VF+P
Sbjct: 389 TGGSEGD-VSIFTSLVLYYILYFVLVAICISINVPAGVFVP 428


>Z48367-7|CAC42266.1|  875|Caenorhabditis elegans Hypothetical
           protein B0491.8b protein.
          Length = 875

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 283 TGNKRSDNLSVFTSISCTHVFYFLFYNIYRCIFI*LSVFLP 161
           TG    D +S+FTS+   ++ YF+   I   I +   VF+P
Sbjct: 420 TGGSEGD-VSIFTSLVLYYILYFVLVAICISINVPAGVFVP 459


>Z48367-6|CAA88325.1|  880|Caenorhabditis elegans Hypothetical
           protein B0491.8a protein.
          Length = 880

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 283 TGNKRSDNLSVFTSISCTHVFYFLFYNIYRCIFI*LSVFLP 161
           TG    D +S+FTS+   ++ YF+   I   I +   VF+P
Sbjct: 420 TGGSEGD-VSIFTSLVLYYILYFVLVAICISINVPAGVFVP 459


>AF319613-1|AAG49523.1|  880|Caenorhabditis elegans CLC-type
           chloride channel CLH-2b protein.
          Length = 880

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 283 TGNKRSDNLSVFTSISCTHVFYFLFYNIYRCIFI*LSVFLP 161
           TG    D +S+FTS+   ++ YF+   I   I +   VF+P
Sbjct: 420 TGGSEGD-VSIFTSLVLYYILYFVLVAICISINVPAGVFVP 459


>AF173171-1|AAF13164.1|  844|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 844

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 283 TGNKRSDNLSVFTSISCTHVFYFLFYNIYRCIFI*LSVFLP 161
           TG    D +S+FTS+   ++ YF+   I   I +   VF+P
Sbjct: 389 TGGSEGD-VSIFTSLVLYYILYFVLVAICISINVPAGVFVP 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,715,928
Number of Sequences: 27780
Number of extensions: 209203
Number of successful extensions: 429
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)