Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    25   0.47 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    25   0.47 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.7  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 206 VKKKIEHMRATYRREYRKVV 265
           +KK + H++ TY +E+ K+V
Sbjct: 91  IKKVLSHIQRTYPKEWSKIV 110


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 206 VKKKIEHMRATYRREYRKVV 265
           +KK + H++ TY +E+ K+V
Sbjct: 91  IKKVLSHIQRTYPKEWSKIV 110


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 154 FISCLTRFFIIVLAMNWIP 98
           F++C   FFI+ LA  ++P
Sbjct: 315 FVACWLPFFILYLATPFVP 333


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 225 CSIFFFTTSIDASSYNSLY 169
           C+IF F   ++ +  N++Y
Sbjct: 301 CTIFLFAAMVEFAFVNTIY 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,235
Number of Sequences: 438
Number of extensions: 2975
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)