Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138...    28   4.4  
At5g04700.1 68418.m00478 hypothetical protein                          27   5.8  
At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138...    27   5.8  
At2g39250.1 68415.m04820 AP2 domain-containing transcription fac...    27   7.7  

>At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 499

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 29  KGVLTERQLIVELLDLYKSLPCLWDPIHSQYNNKESREA 145
           K +L +R+ +VELLDL+ +    WD           R A
Sbjct: 417 KTILLDRKRLVELLDLHHNKTLTWDQFAVAVKEAHERRA 455


>At5g04700.1 68418.m00478 hypothetical protein
          Length = 669

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -2

Query: 268 SDNLSVFTSISCTHVFYFLFYNIYRCIFI*LSVFLP**FISCLTRFFIIVLAM 110
           SD +S F S  CT V  FL     R  F    VFLP   I+ L+  F+ + AM
Sbjct: 556 SDLISCFAS--CTSVLIFLGILTARYSFDDFLVFLPTKMIAGLSILFVSIAAM 606


>At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as ' axi
           1 protein from Nicotiana tabacum -related' based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 481

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 29  KGVLTERQLIVELLDLYKSLPCLWD 103
           K +L +R+ +VELLDL+ +    WD
Sbjct: 414 KTILLDRKRLVELLDLHNNKTLSWD 438


>At2g39250.1 68415.m04820 AP2 domain-containing transcription
           factor, putative AP2_ARATH Floral homeotic protein
           APETALA2.(SP:P47927){Arabidopsis thaliana}
          Length = 222

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +2

Query: 197 IDVVKKKIEHMRATYRREY----RKVVASLVAGGKKHVPSLWYYDHLTFLNN 340
           +D  K+ IE M+   + E+    R+  ASL  GG K+  +    DH+    N
Sbjct: 165 VDDYKQDIEKMKNLSKEEFVQSLRRASASLARGGSKYKNTHMRNDHIHLFQN 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,922,859
Number of Sequences: 28952
Number of extensions: 188912
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)