Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F01f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   2.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.7  

>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 152 FIV*ISHNFTNVCFYNINLIVHRFR 78
           FI+ I    T+VC++ I L  H FR
Sbjct: 502 FII-IPVTLTSVCYFMIGLNSHGFR 525


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 236 EVIGSSCYQCGTHIWIIERHKNVIRHCRF 150
           +V G  C  C     ++E ++NV + C F
Sbjct: 723 KVPGECCAICVNATSLVESNRNVPQKCIF 751


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = +3

Query: 360  VNVLVAPYIETPQSKTLTVRSGSTVKLACNVLYGNPAPSLKWKFINKDS 506
            +N++V    E P    +  +SG +V+L+    +   +P  ++    K S
Sbjct: 888  INMIVQEVPEVPYGLKVLDKSGRSVQLSWVAPFDGNSPITRYMIEYKQS 936


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = -1

Query: 158 CRFIV*ISHNFTNVCFYNINLIVHRFRCIDNNCKTF 51
           C FI+   H    +C Y     +    CI   C+ F
Sbjct: 270 CAFIIFTMHLLFLLCIYYFYCALIILLCIYYFCRAF 305


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,932
Number of Sequences: 336
Number of extensions: 2827
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)