Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    29   0.56 
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    28   0.97 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   1.7  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    27   1.7  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    26   3.0  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   3.0  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   3.9  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.2  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    25   5.2  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   6.8  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   6.8  
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch...    25   6.8  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   9.0  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    25   9.0  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   9.0  

>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 399 SKTLTVRSGSTVKLACNVLYGNPAPSLKWKFI 494
           S+ L VR GST++  CN ++   A  LK+  +
Sbjct: 303 SEALIVRKGSTIEQVCNRIHRTLAEQLKYALV 334


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/62 (19%), Positives = 28/62 (45%)
 Frame = +3

Query: 186 NDPDVGTALITRTADDFICSLTTLTTSGGKDCPENSLAGIEHALRVSDPESTAKKTILVN 365
           N+P+ G+ +            T+L  +  ++   N+L  ++H L++S   +    T+  N
Sbjct: 369 NNPENGSKVTVMMGGSAYTKNTSLIPTNPEEAVNNALKALQHTLKISSKPTLTNATLQQN 428

Query: 366 VL 371
            +
Sbjct: 429 CI 430


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 348 KTILVNVLVAPYIETPQSKTLTVRSGSTVKLACNVLYGN 464
           K  ++++L+APY   P+S+ + +++ +T K     L GN
Sbjct: 694 KLDVLSILIAPYKSLPRSRYMGIQAINTNKCKLAFLSGN 732


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 420 SGSTVKLACNVLYGNPAPSLKWKFINKDSTSRIL 521
           S     L   V Y NP PSL W  ++ DS   ++
Sbjct: 69  SNKQASLESPVSYSNPIPSLTWLSLDGDSPDSLV 102


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 381 YIETPQSKTLTVRSGSTVKLACNVLYGNPAPSLK 482
           Y++  Q      R+ ST K+A   +Y N AP+LK
Sbjct: 339 YLKRYQKTKTKTRAKSTWKIANKSVYSNLAPTLK 372


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 341 SKENHSSKCLSGPIHRNTTVKNIDS 415
           S + H SK LS  IH  +T KN+DS
Sbjct: 320 STKVHPSKKLSVYIHHGSTKKNLDS 344


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 505 ESLFMNFHFKDGAGLPYRTLHASLTVEPERTVN 407
           E LF +  F+ G+G   R   A++  + E+TVN
Sbjct: 175 EQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVN 207


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +2

Query: 284 RELFGRNRACLTCERPRVNSKENHSSKCLSGPIHRNTTVKN 406
           R +FGR       E PR   K    S   S  I R++  KN
Sbjct: 30  RLVFGRKHKTAKLEAPRALIKRKQLSHSTSSDITRHSNAKN 70


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 366 VLVAPYIETPQSKTLTVRSGSTVKLACNVLYGNPAPSLKWKF-INKDSTSRIL 521
           +++  + +TP S TLT  + S   +  +VL  +  PSL+ +F +  +   RIL
Sbjct: 102 LILCLFAKTPTSLTLTGVTSSNEDIGVDVLRTSVLPSLQKRFQVGDELELRIL 154


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 460 PYRTLHASLTVEPERTVNVFDCGVSMYGATK 368
           PYR    +   E E   NVFDC  S+   TK
Sbjct: 298 PYRLRDPTQGSEEEMMENVFDCLCSLVQETK 328


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 11  FTSVYYHDNRSNV*KFYSCYRYNGIY 88
           + S  Y+  R++V +++  Y+Y GIY
Sbjct: 113 YDSYPYNIERADVVRYFILYKYGGIY 138


>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 301 PAKEFSGQSLPPLVVNVVKEH 239
           PA  FSGQS   LV   VKE+
Sbjct: 68  PAPPFSGQSNGKLVTTTVKEY 88


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 63  VVIDTTESMDDEINIIKANIGEVVRNLNNKSTVSDYILVPFNDPDV 200
           V +D  +S+ +  +++     + +RNL   S + DYI    +D D+
Sbjct: 396 VFVDEPKSIIEVCSVMMTVYAQYLRNLKKVSEILDYITKIASDYDL 441


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 88  WTMRLIL*KQTLVKL*EI*TI-NRQCLITFLCLSMI 192
           W + L+  KQ+ V +  + TI  R CL TF CL+ I
Sbjct: 31  WKVDLVPYKQSWVPISIVTTIIQRYCLNTFNCLAEI 66


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -1

Query: 152 FIV*ISHNFTNVCFYNINLIVHRFRCIDNNCKTFTRY 42
           F V +S   T   FY+ +L++H    +++   +++RY
Sbjct: 189 FAVGMSIVMTAFTFYHTSLLIHNLSTLESMSSSWSRY 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,969
Number of Sequences: 5004
Number of extensions: 45509
Number of successful extensions: 150
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)