Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1106 - 10187609-10190041,10190292-10191932                       28   5.2  
10_06_0141 - 11151344-11151531,11151926-11152275,11153119-111532...    27   6.9  
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300     27   6.9  
11_03_0105 + 10040421-10040891,10041375-10041499,10041884-10042748     27   9.1  
08_01_0016 - 109152-109214,109296-109385,109853-109954,110046-11...    27   9.1  
07_03_1721 - 29023979-29025295                                         27   9.1  

>07_01_1106 - 10187609-10190041,10190292-10191932
          Length = 1357

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/71 (26%), Positives = 36/71 (50%)
 Frame = +3

Query: 75   TTESMDDEINIIKANIGEVVRNLNNKSTVSDYILVPFNDPDVGTALITRTADDFICSLTT 254
            ++E M+DE +   AN  +V++NL   +++ +  +   N P  G +      D  +C L +
Sbjct: 1111 SSEEMEDESDKEIAN--QVLQNLQPNTSIQELAIQ--NYP--GNSFPNWIKDSGLCMLVS 1164

Query: 255  LTTSGGKDCPE 287
            +T    +DC E
Sbjct: 1165 ITIDNSQDCNE 1175


>10_06_0141 -
           11151344-11151531,11151926-11152275,11153119-11153274,
           11153505-11153674,11155431-11155589,11157139-11157447,
           11157550-11157750
          Length = 510

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = -3

Query: 402 LTVVFRCMGPLRHLLEWFSLLLTLGRSHVRHARFRPKSSLDSLYHRS---WLMWS-KNI* 235
           L+ V R  GPL  + EW +     G S+  + RF  ++ LD +Y R+   W  W+ KN+ 
Sbjct: 435 LSTVTRPNGPLTFVGEWVAEWNVQGASNQDYQRF-AQAQLD-VYGRATFGWAYWTYKNVN 492

Query: 234 SH 229
           +H
Sbjct: 493 NH 494


>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
          Length = 623

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -2

Query: 364 FTRMVFFAVDSGSLTRKACSIPAKEFSGQSLPPLVVNVVKEHMKSSAVL-VINAVPTSGS 188
           F  M F  ++S  LT + C   A     Q +P LVV V+K+H+     +  ++ +    S
Sbjct: 554 FYNMRFLWMNSCRLTMRGCRDVA-----QQMPDLVVEVMKDHLDDEGEMETVDKLYLYRS 608

Query: 187 LKGTR 173
           L G R
Sbjct: 609 LAGAR 613


>11_03_0105 + 10040421-10040891,10041375-10041499,10041884-10042748
          Length = 486

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 22/94 (23%), Positives = 36/94 (38%)
 Frame = +3

Query: 189 DPDVGTALITRTADDFICSLTTLTTSGGKDCPENSLAGIEHALRVSDPESTAKKTILVNV 368
           D D     +    D F C L       G D    SL  +    +V + +   +   +   
Sbjct: 183 DDDANAHEVLPKTDGFRC-LEKAAVETGNDAGPWSLCSVT---QVEETKIVLRMAPIFVA 238

Query: 369 LVAPYIETPQSKTLTVRSGSTVKLACNVLYGNPA 470
            V  YI  P   +LTV+ G+T+      ++ +PA
Sbjct: 239 AVLSYIPVPLLLSLTVQQGNTMDTRLGAVHISPA 272


>08_01_0016 -
           109152-109214,109296-109385,109853-109954,110046-110213,
           110510-110530,110836-110896,110987-111099,112125-112202,
           112294-112434,112532-112696,112776-112868,113096-113162,
           113285-113388,113896-114041,114303-114579
          Length = 562

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 15  LLFIIMITEVTCKSFTVVIDTTESMDDEINIIK 113
           LLF+++I       F+ ++ TT  +DD INI +
Sbjct: 520 LLFLLVIGSYLIILFSFLVITTRGLDDLINIFR 552


>07_03_1721 - 29023979-29025295
          Length = 438

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +3

Query: 270 GKDCPENSLAGIEHALRVSDPESTAKKTILVNVLVAPYIETP-QSKTLTVRSGSTVKLAC 446
           G D  E +L  I   LR+ DP+  AK +I   + + P   +  +S      S   +  A 
Sbjct: 360 GDDKAEKNL-WIPKTLRIDDPDEAAKSSIWTTLGIEPGDRSMFRSFQSKPESREQISGAA 418

Query: 447 NVLYGNPA 470
            VL  NPA
Sbjct: 419 RVLQANPA 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,664,242
Number of Sequences: 37544
Number of extensions: 277955
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)