Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.051
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.47 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 28.3 bits (60), Expect = 0.051
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 339 TAKKTILVNVLVAPYIETPQSKTLTVRSGSTVKLACNVLYGNPAPSLKWKF 491
           +A+ T+ V V+V P I+      L + +G    L C V  G+   +++W +
Sbjct: 570 SARGTLEVQVMVPPTIQQFSFTKLPMNAGEFANLQCIVPTGDLPLNIRWSY 620



 Score = 25.4 bits (53), Expect = 0.36
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 411 TVRSGSTVKLACNVLYGNPAPSLKWKFINK 500
           T++ G ++ L C V  GNP P + W+   K
Sbjct: 404 TLQPGPSMFLKC-VASGNPTPEITWELDGK 432



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 360 VNVLVAPYIETPQSKTLTVRSGSTVKLACNVLYGNPAP 473
           +N++V    E P    +  +SG +V+L+    Y   +P
Sbjct: 868 INMIVQEVPEVPYGLKVLDKSGRSVQLSWAAPYDGNSP 905


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 339 TAKKTILVNVLVAPYIETPQSKTLTVRSGSTVKLACNVLYGNPAPSLKW 485
           +A+++  V V+V P IE P +    +  G   +  C V  G+P  ++ W
Sbjct: 598 SARRSGDVAVIVPPIIE-PFTFQEGLSEGMRTRTVCGVAAGDPPLTISW 645


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 454 RTLHASLTVEPERTVNVFDCGVSMYGATKTFTR 356
           R LH ++ V   +  N   C V+M+G  +++ +
Sbjct: 86  RVLHTTVWVAGAQRGNEQRCTVTMHGTVQSYDK 118


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 132 VRNLNNKSTVSDY 170
           + +LNN+ST SD+
Sbjct: 317 IADLNNQSTASDF 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,269
Number of Sequences: 438
Number of extensions: 3278
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)