Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53390.1 68418.m06634 expressed protein                             35   0.038
At3g54550.1 68416.m06036 hypothetical protein contains Pfam prof...    29   1.4  
At3g17940.1 68416.m02284 aldose 1-epimerase family protein simil...    29   1.9  
At5g39500.1 68418.m04783 pattern formation protein, putative sim...    28   3.3  
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei...    28   3.3  
At4g25150.1 68417.m03620 acid phosphatase, putative similar to a...    28   3.3  
At4g10200.1 68417.m01672 hAT dimerisation domain-containing prot...    28   4.4  
At3g60910.1 68416.m06814 expressed protein low similarity to PIR...    27   5.8  
At3g01780.1 68416.m00118 expressed protein est hit,                    27   5.8  
At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes f...    27   5.8  
At3g11720.1 68416.m01437 expressed protein                             27   7.7  
At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein / ...    27   7.7  

>At5g53390.1 68418.m06634 expressed protein
          Length = 486

 Score = 34.7 bits (76), Expect = 0.038
 Identities = 20/69 (28%), Positives = 36/69 (52%)
 Frame = +3

Query: 102 NIIKANIGEVVRNLNNKSTVSDYILVPFNDPDVGTALITRTADDFICSLTTLTTSGGKDC 281
           +I++ N G+  R +  K  V ++++VP  DPD+      +  +D+I  LTT+     K  
Sbjct: 64  SILEMNNGKKPRWVRTKVKVEEHVIVPDVDPDIENP--DQYLEDYISKLTTIPMDLSKPL 121

Query: 282 PENSLAGIE 308
            E  L G++
Sbjct: 122 WEMHLLGVK 130


>At3g54550.1 68416.m06036 hypothetical protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 288

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = +3

Query: 291 SLAGIEHALRVSDPESTAKKTILVNVLVAPYIETPQSKTLTVRSGSTVKLACNVLYGNPA 470
           +LAG++ +L   + E     ++ +  +V  YIE P S+    +S   V+  CN   G+  
Sbjct: 37  NLAGVDSSLSRENSEEIEPSSVCLRRMVQNYIEDPDSEK---QSKCIVRNRCNCFSGSGT 93

Query: 471 PSLKWKFINKDSTSRIL 521
            S         S+ R+L
Sbjct: 94  DSSDEDDEESSSSRRVL 110


>At3g17940.1 68416.m02284 aldose 1-epimerase family protein similar
           to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149]
           from [Acinetobacter calcoaceticus]; contains Pfam
           profile PF01263 Aldose 1-epimerase
          Length = 341

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 276 DCPENSLAGIEHALRVSDPESTAKKTILVNV 368
           DCP+    G++HA ++SD  S+    +  NV
Sbjct: 246 DCPDQEKEGLKHAAKLSDAASSRVLNLWTNV 276


>At5g39500.1 68418.m04783 pattern formation protein, putative
           similar to SP|Q42510 Pattern formation protein EMB30
           {Arabidopsis thaliana}; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1443

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 168 YILVPFNDPDVGTALITR-TADDFICSLTTLTTSGGKDCPENSLAGIEHALRVSD 329
           Y ++  N       + TR T +DFI +  T+  +GG D P   L+ I H++R S+
Sbjct: 692 YSIILLNTDQHNAQVKTRMTEEDFIRNNRTI--NGGADLPREYLSEIYHSIRHSE 744


>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 758

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 293 FGRNRACLTCE--RPRVNSKENHSSKCLSGPIHRNTTVKN 406
           +GRN ACL C+  RPR +S  + +S   S P      V+N
Sbjct: 323 YGRNVACLRCDCKRPRDSSLNSANSDYSSDPELERRLVEN 362


>At4g25150.1 68417.m03620 acid phosphatase, putative similar to acid
           phosphatase-1(1); Apase-1(1) [Lycopersicon esculentum]
           GI:7705154, acid phosphatase [Glycine max] GI:3341443;
           contains Pfam profile PF03767: HAD superfamily
           (subfamily IIIB) phosphatase
          Length = 260

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 329 PRVNSKENHSSKCLSGPIHRNTTVKNIDSSFRLNC 433
           P   S EN SS  ++ P+   T +KNI+ +  L+C
Sbjct: 14  PLAFSNENSSSYLIARPLIFETQLKNINDNVNLHC 48


>At4g10200.1 68417.m01672 hAT dimerisation domain-containing protein
           / transposase-related low similarity to transposase
           [Ipomoea purpurea] AB004906 GI:4063770
          Length = 733

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 378 GPLRHLLEWFSLLLTLG-RSHVRHARFRPKSSLDSLYHRSWLMWSK 244
           GP++ + E ++   T G R H  H  ++ +        R+WL++SK
Sbjct: 83  GPMKRVHEKYAFPKTAGIRRHFSHRYYKREMKNGDKQDRNWLLYSK 128


>At3g60910.1 68416.m06814 expressed protein low similarity to
           PIR|I46078 endothelin converting enzyme from Bos
           primigenius taurus
          Length = 252

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = +3

Query: 54  SFTVVID--TTESM---DDEINIIKANIGEVVRNLNNKSTVSDYILVPFNDPDVGTALIT 218
           SF  +ID  T +S+    D +      +GEV R +    T   Y L+ + DP V    +T
Sbjct: 115 SFDTIIDKGTLDSLMCGSDALLSASRMLGEVSRLIKPGGT---YFLITYGDPKVRMPHLT 171

Query: 219 RTADDFICSLTTLTTSGGK 275
           R+A ++  SL  +   G K
Sbjct: 172 RSAYNWKISLYIIPRPGFK 190


>At3g01780.1 68416.m00118 expressed protein est hit,
          Length = 1176

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 90  DDEINIIKANIGEVVRNLNNKSTVSD 167
           DD +NII ANI +V+ NL+  +T S+
Sbjct: 609 DDPLNIIIANIHKVLFNLDAAATTSN 634


>At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes from
           this gene
          Length = 206

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 375 PLRHLLEWFSLLLTLGRSHVRHARFRPKSSLD 280
           P+  L + F+L   L R  +RH +F P S LD
Sbjct: 51  PIISLPKIFALSSLLSRLDLRHRKFHPSSDLD 82


>At3g11720.1 68416.m01437 expressed protein
          Length = 542

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 105 IIKANIGEVVRNLNNKSTVSDYILVPFNDPDVGTALITRTADDFICSLTTLTTSGGKDCP 284
           + K  IG V  + + K+ ++D +     +     AL +    D IC +  L +  G+DC 
Sbjct: 262 LFKKTIGSVAESDDYKTVLADPLYTHIRE-----ALYSSDKTDEICQVNELHSQQGRDCE 316

Query: 285 E 287
           E
Sbjct: 317 E 317


>At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein /
            carbohydrate-binding domain-containing protein similar to
            GB:AAD27896 to endoxylanases gi|1255238
            (Thermoanaerobacterium thermosulfurigenes), gi|1813595
            (Hordeum vulgare) and others ; contains Pfam profiles
            PF00331: Glycosyl hydrolase family 10, PF02018:
            Carbohydrate binding domain
          Length = 1063

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 496  FMNFHFKDGAGLPYRTLHASLTVE 425
            F++   +DG GL +R  H S TVE
Sbjct: 1013 FVDGEIEDGGGLEFRGYHGSYTVE 1036


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,321,048
Number of Sequences: 28952
Number of extensions: 232822
Number of successful extensions: 588
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)