Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E12f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    25   0.54 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   0.94 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.8  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   5.0  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   6.6  

>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 351 VGEATVQDQYRLILTPPKDIPFYKDGYY 434
           +G+   +D+YR++ T  + +   K+ YY
Sbjct: 150 IGKTRTKDKYRVVYTDHQRVELEKEFYY 177


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 441 CFCSSRLYRRGCLWVASKSAC 379
           CF  ++ YR+   W +S + C
Sbjct: 673 CFYENKFYRQEAQWTSSDNPC 693


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 187 TPTAATMHSAITYCTLNEFILNALCL 110
           T T  T+ +A+ YC+L  F+L  L +
Sbjct: 403 TKTFCTLVTALVYCSLAIFVLCELLI 428


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 161 RNHILHLERIHP*CTLF 111
           R H+L LE++H  C  F
Sbjct: 155 RFHLLELEKVHELCDNF 171


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +3

Query: 417 YKDGYYKNNGIKIIKQK 467
           ++ G++K  G+KI+K++
Sbjct: 360 FRSGFFKLCGMKIVKKR 376


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 155 HILHLERIHP*CTLF 111
           H+L LE++H  C  F
Sbjct: 1   HLLELEKVHELCDNF 15


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,432
Number of Sequences: 336
Number of extensions: 3199
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)