Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    29   0.56 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   1.3  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   1.7  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    26   3.9  

>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +3

Query: 198 DGKWHPYHYGDSGKYIPTDEGKYIHIPNPYIHIDNPYDGGFGP----YAHDYEPYVGEAT 365
           +GK H  + GDSG  I  +   +   P   +  + PY     P     A +  P +G+AT
Sbjct: 139 NGKLHSLNLGDSGFLILRNGAIHYASPAQVLQFNMPYQLAIYPRNYRSAENIGPKMGQAT 198

Query: 366 VQD 374
           V D
Sbjct: 199 VHD 201


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 213 PYHYGDSGKYIPTDEGKYIHIPNPYIHIDNPYDGGFG 323
           P    D G++   D+  Y+ IP+P++ +   Y GG G
Sbjct: 264 PNRVDDHGRFHFKDDS-YLPIPHPFLGVPKVYRGGSG 299


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 234 GKYIPTDEGKYIHIPNPYIHIDNPYDGGFGPY 329
           G  +PT  G Y+  PN Y  +  PY+  + PY
Sbjct: 710 GSSMPTANGFYV--PNTYSPVPFPYNTSYPPY 739


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 207 IFHPQQVHPPRLRCIAQSHTAP*TNSS 127
           +FHP++V   +L  + Q   +P TN+S
Sbjct: 425 LFHPEEVQQQQLEQMQQQQFSPETNAS 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,526
Number of Sequences: 5004
Number of extensions: 46015
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)