Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0249 - 1844894-1845363,1845557-1848158                           29   3.0  
01_06_1187 + 35232252-35232976,35233078-35233134,35233323-35233692     27   6.9  
02_04_0199 - 20861793-20862023,20862588-20862798,20863260-208641...    27   9.1  

>07_01_0249 - 1844894-1845363,1845557-1848158
          Length = 1023

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = +3

Query: 183 GVPVEDGKWHPYHY----GD--SGKYIPTDEGKYIHIPNPYIHIDNPYDGGFGP 326
           G+P E G+W    Y    G+  SGK IP + G    +   YI   N Y GG  P
Sbjct: 181 GIPPEYGRWGRLQYLAVSGNELSGK-IPPELGNLTSLRELYIGYFNSYSGGIPP 233


>01_06_1187 + 35232252-35232976,35233078-35233134,35233323-35233692
          Length = 383

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +3

Query: 348 YVGEATVQDQYRLILTPPKDIPFYK-----DGYYKNNGIKIIKQKHNYDEDKYDFXFXTD 512
           +V   ++ D    I+ PP +I  Y      D Y  +N   I +Q  ++D D  +F   TD
Sbjct: 239 FVMRISLSDGKYRIIKPPVEIERYNYHEYPDAYGHDNSEAIEEQNFDWDSDNDNFINTTD 298

Query: 513 E 515
           E
Sbjct: 299 E 299


>02_04_0199 -
           20861793-20862023,20862588-20862798,20863260-20864142,
           20864363-20865608
          Length = 856

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 162 LCIVAAVGVPVEDGKWHP 215
           L +V+A  V  EDG+WHP
Sbjct: 509 LPLVSAAAVEEEDGEWHP 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,531,980
Number of Sequences: 37544
Number of extensions: 324237
Number of successful extensions: 780
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)