Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307E12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79752-6|CAB02080.2| 423|Caenorhabditis elegans Hypothetical pr... 32 0.29
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm... 29 2.0
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm... 29 2.0
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ... 29 2.0
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 28 3.5
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 28 3.5
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 28 3.5
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 28 3.5
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 28 3.5
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 28 3.5
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 28 3.5
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 27 6.2
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 27 6.2
Z71266-9|CAD24483.1| 489|Caenorhabditis elegans Hypothetical pr... 27 8.1
U64845-5|AAC48027.1| 581|Caenorhabditis elegans Hypothetical pr... 27 8.1
AB040992-1|BAB21560.1| 489|Caenorhabditis elegans CeCRMP/DHP-1 ... 27 8.1
>Z79752-6|CAB02080.2| 423|Caenorhabditis elegans Hypothetical
protein D2005.6 protein.
Length = 423
Score = 31.9 bits (69), Expect = 0.29
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +3
Query: 222 YGDSGKYIPTDEGKYIHIPNP-YIHID----NPYDGGFGPYAHDYEPYVGEATVQDQY 380
YGD+ + P+ + +Y + P Y H + + Y G +GPYA Y PY G + Y
Sbjct: 70 YGDTQQQHPSQQ-QYPYYGYPSYSHYNYQPASAYPGAYGPYAGAYGPYAGASGAYRPY 126
>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform a protein.
Length = 1117
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 303 PYDGGFGPYAHDYEPYVGEATVQDQYRLILTPPKDI 410
PY GG P + Y+ YV T +D Y+ ++ DI
Sbjct: 652 PYYGGVHPNSGKYKTYVDPTTYEDPYQALIEFTFDI 687
>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform b protein.
Length = 1122
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 303 PYDGGFGPYAHDYEPYVGEATVQDQYRLILTPPKDI 410
PY GG P + Y+ YV T +D Y+ ++ DI
Sbjct: 652 PYYGGVHPNSGKYKTYVDPTTYEDPYQALIEFTFDI 687
>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
tyrosine kinase protein.
Length = 1122
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 303 PYDGGFGPYAHDYEPYVGEATVQDQYRLILTPPKDI 410
PY GG P + Y+ YV T +D Y+ ++ DI
Sbjct: 652 PYYGGVHPNSGKYKTYVDPTTYEDPYQALIEFTFDI 687
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 195 EDGKWHPYHYGDSGKYIPTDEG 260
+D KW PY YG+ PT G
Sbjct: 792 KDAKWSPYGYGNGSASFPTSLG 813
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 195 EDGKWHPYHYGDSGKYIPTDEG 260
+D KW PY YG+ PT G
Sbjct: 726 KDAKWSPYGYGNGSASFPTSLG 747
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 195 EDGKWHPYHYGDSGKYIPTDEG 260
+D KW PY YG+ PT G
Sbjct: 792 KDAKWSPYGYGNGSASFPTSLG 813
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 195 EDGKWHPYHYGDSGKYIPTDEG 260
+D KW PY YG+ PT G
Sbjct: 726 KDAKWSPYGYGNGSASFPTSLG 747
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 357 EATVQDQYRLILTPPKDIPFYKDGYY 434
EA D+YR + P K+IP + DGY+
Sbjct: 29 EAWDGDKYRELYCPSKNIPKWLDGYF 54
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 357 EATVQDQYRLILTPPKDIPFYKDGYY 434
EA D+YR + P K+IP + DGY+
Sbjct: 29 EAWDGDKYRELYCPSKNIPKWLDGYF 54
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 195 EDGKWHPYHYGDSGKYIPTDEG 260
+D KW PY YG+ PT G
Sbjct: 726 KDAKWSPYGYGNGSASFPTSLG 747
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 195 EDGKWHPYHYGDSGKYIPTDEG 260
+D KW PY YG+ PT G
Sbjct: 726 KDAKWSPYGYGNGSASFPTSLG 747
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 48 QCLPVPRTTVTRNCCCWNRN 107
+C P+P T CCC N N
Sbjct: 1545 ECKPLPYDTTVTGCCCDNYN 1564
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 48 QCLPVPRTTVTRNCCCWNRN 107
+C P+P T CCC N N
Sbjct: 1545 ECKPLPYDTTVTGCCCDNYN 1564
>Z71266-9|CAD24483.1| 489|Caenorhabditis elegans Hypothetical
protein R06C7.3 protein.
Length = 489
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 312 GGFGPYAHDYEPYVGEATVQD 374
GG P+ H PY+GE T D
Sbjct: 56 GGIDPHTHMQMPYMGEVTKDD 76
>U64845-5|AAC48027.1| 581|Caenorhabditis elegans Hypothetical
protein F45F2.6 protein.
Length = 581
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 69 TTVTRNCCCWNRNYKQSALRMNSFKVQYVIALCIVAAV 182
+T+ N W +N K + + S Y + L IVA +
Sbjct: 28 STIPENLPAWTKNTKAQSFGLKSLTALYTLILTIVAFI 65
>AB040992-1|BAB21560.1| 489|Caenorhabditis elegans CeCRMP/DHP-1
protein.
Length = 489
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 312 GGFGPYAHDYEPYVGEATVQD 374
GG P+ H PY+GE T D
Sbjct: 56 GGIDPHTHMQMPYMGEVTKDD 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,224,321
Number of Sequences: 27780
Number of extensions: 277277
Number of successful extensions: 682
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -