Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 328 MHTTMNPMLARLQFKINT 381
           + +T+ P LAR QF+ NT
Sbjct: 336 LKSTLTPKLARKQFQKNT 353


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 417 YKDGYYKNNGIKIIKQKHNYDE 482
           Y + YY NN  K +    NY E
Sbjct: 313 YSNNYYNNNNYKKLYYNINYIE 334


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 137 VQGAVCDCAMHRSRG 181
           V+G + DC+ H  RG
Sbjct: 320 VEGVIIDCSNHIGRG 334


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +3

Query: 75 VTRNCCCW 98
          V  +CCCW
Sbjct: 7  VVMSCCCW 14


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 399 PKDIPFYKDGY 431
           P+D+PF KD Y
Sbjct: 349 PEDLPFIKDIY 359


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 399 PKDIPFYKDGY 431
           P+D+PF KD Y
Sbjct: 55  PEDLPFIKDIY 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,083
Number of Sequences: 438
Number of extensions: 4139
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)