Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13140.1 68416.m01644 hydroxyproline-rich glycoprotein family...    30   1.1  
At3g03520.1 68416.m00351 phosphoesterase family protein low simi...    29   1.9  
At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK...    28   3.3  
At5g10060.1 68418.m01165 expressed protein                             28   3.3  
At3g48610.1 68416.m05307 phosphoesterase family protein low simi...    28   3.3  
At4g08380.1 68417.m01384 proline-rich extensin-like family prote...    27   5.8  
At3g03540.1 68416.m00355 phosphoesterase family protein similar ...    27   5.8  
At3g03530.1 68416.m00353 phosphoesterase family protein low simi...    27   5.8  
At4g11450.1 68417.m01843 expressed protein                             27   7.7  
At4g01550.1 68417.m00201 no apical meristem (NAM) family protein...    27   7.7  
At3g28430.1 68416.m03553 expressed protein non-consensus GC dono...    27   7.7  
At2g33520.1 68415.m04109 expressed protein                             27   7.7  

>At3g13140.1 68416.m01644 hydroxyproline-rich glycoprotein family
           protein
          Length = 183

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 219 HYGDSGKYIP-TDEGKYIHIPNPYIHIDNPYDGGFGPYAH 335
           +YG SG YIP T  G Y + P+ Y +   P+  G G YAH
Sbjct: 88  YYGQSGYYIPTTSRGNYAY-PSLYQYPPPPHVYG-GNYAH 125


>At3g03520.1 68416.m00351 phosphoesterase family protein low
           similarity to SP|P95246 Phospholipase C 2 precursor (EC
           3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam
           profile PF04185: Phosphoesterase family
          Length = 523

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 258 GKYIHIPNPYIHIDNPYDGGFGPYAHDYE 344
           G Y H+P P I + NP DG  GP  ++++
Sbjct: 303 GYYDHVPTPVIGVPNP-DGLVGPEPYNFK 330


>At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK,
           putative similar to cyclin dependent kinase C
           [Lycopersicon esculentum] gi|15215944|emb|CAC51391
          Length = 513

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -3

Query: 216 KDAIFHPQQVH---PPRLRCIAQSHTAP 142
           K  + HPQQ H   PP+   + QSH AP
Sbjct: 364 KQKLQHPQQQHSRLPPQQHGVGQSHAAP 391


>At5g10060.1 68418.m01165 expressed protein
          Length = 469

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 186 VPVEDGKWHPYHYGDSGKYIPTDEGKYIHIPNP 284
           VPV D       Y +S    PT +G+Y  IPNP
Sbjct: 364 VPVSDTNASFPSYNNSQNQTPTTQGQYHVIPNP 396


>At3g48610.1 68416.m05307 phosphoesterase family protein low
           similarity to SP|P95246 Phospholipase C 2 precursor (EC
           3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam
           profile PF04185: Phosphoesterase family
          Length = 520

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 258 GKYIHIPNPYIHIDNPYDGGFGP 326
           G Y H+  PY+ I NP DG  GP
Sbjct: 316 GFYDHVKTPYVGIPNP-DGNTGP 337


>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 437

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 20/74 (27%), Positives = 27/74 (36%)
 Frame = +3

Query: 213 PYHYGDSGKYIPTDEGKYIHIPNPYIHIDNPYDGGFGPYAHDYEPYVGEATVQDQYRLIL 392
           PY Y     Y+ +    Y + P PY +   P      PY +   PYV  +     Y    
Sbjct: 133 PYVYSSPPPYVYSSPPPYAYSPPPYAYSPPP-----SPYVYKSPPYVYSSPPPYAY---- 183

Query: 393 TPPKDIPFYKDGYY 434
           +PP     YK   Y
Sbjct: 184 SPPPSPYVYKSPPY 197


>At3g03540.1 68416.m00355 phosphoesterase family protein similar to
           SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3)
           {Mycobacterium tuberculosis}; contains Pfam profile
           PF04185: Phosphoesterase family
          Length = 521

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 258 GKYIHIPNPYIHIDNPYDGGFGPYAHDYE 344
           G Y H+P P   + NP DG  GP  +++E
Sbjct: 302 GFYDHVPTPLDGVPNP-DGILGPPPYNFE 329


>At3g03530.1 68416.m00353 phosphoesterase family protein low
           similarity to SP|P95246 Phospholipase C 2 precursor (EC
           3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam
           profile PF04185: Phosphoesterase family
          Length = 538

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 258 GKYIHIPNPYIHIDNPYDGGFGPYAHDYE 344
           G Y H+P P   + NP DG  GP  +++E
Sbjct: 303 GFYDHVPTPVDGVPNP-DGILGPPPYNFE 330


>At4g11450.1 68417.m01843 expressed protein 
          Length = 694

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 170 RSRGGCTC*GWKMA 211
           RS GGC C GW MA
Sbjct: 539 RSGGGCDCGGWDMA 552


>At4g01550.1 68417.m00201 no apical meristem (NAM) family protein
           similar to  NAC1 (GI:7716952) {Medicago truncatula};
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 457

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 175 PRWVYLLRMENGILTITAILAN 240
           PR++YL+RM  G + + A+++N
Sbjct: 418 PRYIYLMRMIIGFILLLALISN 439


>At3g28430.1 68416.m03553 expressed protein non-consensus GC donor
           splice site at exon 16
          Length = 837

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 181 WVYLLRMENGILTITAILANTSPQTKE 261
           W+ L   +NGI+ +TA LA   P+  E
Sbjct: 726 WIVLADPDNGIVRVTAPLAGCKPRIDE 752


>At2g33520.1 68415.m04109 expressed protein 
          Length = 97

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 51  CLPVPRTTVTRNCCCW 98
           C P  R+ +T  CCCW
Sbjct: 71  CFPFLRSCLTTLCCCW 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,428,030
Number of Sequences: 28952
Number of extensions: 254255
Number of successful extensions: 602
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)