Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   3.0  
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc...    26   3.9  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   3.9  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   5.2  
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    25   6.8  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   9.0  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   9.0  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   9.0  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   9.0  

>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 362 QWRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFPGRRTS 493
           +W++E +  R+ A  A L S+  V L         +F P RRT+
Sbjct: 813 RWKREFQSNRDKALKAILDSQSKVSLRNFKQGSLVLFLPTRRTA 856


>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 365 WRKEN--EYKRNIAKVAALSSEKDVILARLDDLP 460
           +RKE+   Y++ IAKVA L      ++ARL+  P
Sbjct: 177 FRKEDIDRYEQTIAKVAYLKKNLPRVVARLEKTP 210


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 450 SSLASITSFSEDSAATFAMLRLYSFSLRH 364
           S  A+I   S DSA  F   RLY   L+H
Sbjct: 723 SKTAAILGVSRDSAKVFNYGRLYGAGLKH 751


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 455 SRQVSLVSHLFQKTVQRPLRCCVCIRS 375
           +R  +L SH+   T  RP +C +C +S
Sbjct: 582 TRAYNLKSHMNTHTNYRPFQCSICKKS 608


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 74  VSLILKQFSYLFRIRFNHENTCNAAVV*CSMASDNNMAGASKTALPPGSDD--GNSVFSM 247
           V+ +LK +  ++RI+F H+ + + A    S     N    S   +  G D+  G  V+S+
Sbjct: 79  VADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSI 138


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 452 RQVSLVSHLFQKTVQRPLRCCVCIRSPCAID 360
           R  S++  LFQ   +  L C +C +   A D
Sbjct: 423 RNDSIIVQLFQGMYKSTLECSICYQKSTAFD 453


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 443 RLDDLPSWVFFPGRRTS 493
           ++DDLPS+  FPG+  S
Sbjct: 244 KVDDLPSYSIFPGQIVS 260


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 501 TIRLVRRPGKNT---HEGKSSSLASITSFSEDSAAT 403
           T+ +   PG N+   +   S+ LAS+T  S+D A+T
Sbjct: 45  TVYVTAVPGANSSSSYTSYSTGLASVTESSDDGAST 80


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 232 QCFFYDVHISQKGVDCRSCV 291
           QC++YD   + K  DCRS +
Sbjct: 121 QCYYYDSLSNGKTKDCRSAL 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,724
Number of Sequences: 5004
Number of extensions: 43898
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)