Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307E11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0931 - 22720388-22720393,22720586-22720649,22720770-22721356 29 2.3
11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158... 29 3.0
06_01_0033 - 346273-347355 29 3.0
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 4.0
08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381 28 5.2
03_06_0619 - 35136435-35136728,35137155-35137358,35137476-351376... 27 6.9
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 27 9.1
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420... 27 9.1
02_01_0042 + 295608-296222,298479-298925 27 9.1
>07_03_0931 - 22720388-22720393,22720586-22720649,22720770-22721356
Length = 218
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 244 YDVHISQKGVDCRSCVLSRLYAMERCVAYWARYIVGDARSMAQGERI 384
YDV I+ +GVD + V +RL+ +R VA R + D +SM G+R+
Sbjct: 59 YDVFINHRGVDTKRTV-ARLF-YDRLVAAGVRAFL-DNQSMRPGDRL 102
>11_05_0079 +
18914668-18914753,18915123-18915338,18915829-18915895,
18916656-18916723,18916999-18917125,18918240-18918339,
18918405-18918433,18918678-18918730,18919246-18919732
Length = 410
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 365 WRKENEYKRNIAKVAALSSEKDVILARLDDLPSWV 469
W K N+Y + K K V+LAR LPS++
Sbjct: 261 WLKSNKYFHIVVKGVERDGWKFVLLARFSPLPSYI 295
>06_01_0033 - 346273-347355
Length = 360
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +2
Query: 272 SIVGAVY----LVGYMQWSVAWLIGPVILSVMRDQWR 370
++VG+ Y L GY W++ + + + S++RDQ R
Sbjct: 257 AVVGSAYEVIKLKGYTSWAIGYSVASIAWSLLRDQRR 293
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 341 ILSVMRDQWRKENEYKRNIAKVAALSSEKDVILARLDDLPSW 466
ILS+ D W + N AK+ + S + DV+ D PSW
Sbjct: 809 ILSLEFDPWDESYSTANNFAKMLSASEKNDVLF----DAPSW 846
>08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381
Length = 383
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 232 VAIITAWW*GSFACTCHVIITGHAA 158
+A++ WW S A +C I+ H A
Sbjct: 17 LALVAQWWSSSMAASCSFTISNHCA 41
>03_06_0619 -
35136435-35136728,35137155-35137358,35137476-35137646,
35137902-35138050,35138380-35138527,35138614-35138682,
35138767-35139027,35139223-35139417,35139772-35139888,
35140026-35140961
Length = 847
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 341 ILSVMRDQWRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFP 478
IL+ +WRK ++K N+ KVA+ + + + R+ SW+ P
Sbjct: 441 ILTNFEQRWRKATKWKVNLKKVASWHHDTLIKINRM----SWIVTP 482
>12_02_0870 -
23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -1
Query: 479 RGRIPMKASRQVSLVSHLFQKTV---QRPLRCCVCIRS 375
R R K +V SH+++K + + L+CCVC++S
Sbjct: 59 RARKYKKLKDKVPASSHIWRKELGSRSKGLKCCVCLKS 96
>11_06_0025 -
19341127-19341339,19341426-19341620,19341912-19342088,
19342505-19342672,19343533-19343574,19344129-19344214,
19345218-19345545
Length = 402
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 191 ASKTALPPGSDDGNSVFSMMYTFLKKVSIVGAVYLVGYMQWSV 319
A LPPGS S+ + FL S++ +Y+V ++ +SV
Sbjct: 92 APAVPLPPGSQ--TSLHLSCWYFLVSYSVIYEIYIVTFVSYSV 132
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 287 VYLVGYMQWSVAWLIGPVILSVMRDQWR 370
+ L GY W++ + + + S++RDQ R
Sbjct: 261 ISLKGYTSWAIGYSVASLAASLLRDQHR 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,072,086
Number of Sequences: 37544
Number of extensions: 280224
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -