Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307E11f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31) 32 0.25
SB_3985| Best HMM Match : C2 (HMM E-Value=0) 30 1.0
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 30 1.3
SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 29 2.3
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 29 2.3
SB_58127| Best HMM Match : DUF1605 (HMM E-Value=0.17) 29 3.1
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05) 28 5.4
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18) 28 5.4
SB_43254| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_2931| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_31278| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_24067| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +2
Query: 236 VFSMMYTFLKKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQWRKENEYK-RNIAKVAA 412
+ + + +LK V + ++ +G+M S W++ +++ M W+ E K + AK+
Sbjct: 45 IVTFVLKYLKFVGVALGIWFMGWMGLSYVWVLCGLLVFTM---WKLNQEDKSKRRAKLQE 101
Query: 413 LSSEKDVILARLDDLPSWVFFP 478
+ I+A++DDLP+WVFFP
Sbjct: 102 VMKTDSEIVAKMDDLPAWVFFP 123
Score = 31.5 bits (68), Expect = 0.44
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = +3
Query: 477 PDVERAEWLNRILLQ 521
PDVERAEWLN++++Q
Sbjct: 123 PDVERAEWLNKMIVQ 137
>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
Length = 778
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +2
Query: 239 FSMMYTFLKKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQWRKENEYKRNIAKVAALS 418
FS +TFL + + G + S AWL+ + + KR I +V +
Sbjct: 16 FSHFFTFLGWFVLAWIAWAFGALHLSFAWLVLFLFIGAFLQSGHLLKSNKRKIHRV--IK 73
Query: 419 SEKDVILARLDDLPSWVFF 475
E DV ++PSW++F
Sbjct: 74 QENDVKKV-WPNMPSWIYF 91
>SB_3985| Best HMM Match : C2 (HMM E-Value=0)
Length = 835
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +2
Query: 284 AVYLVGYMQWSVAWLIGPVILSV-MRDQWRKENEYKRNIAKVAALSSEKDVI 436
A++LVGYM +S AW++ +++ V + + K+ +++ N+ + A +SS D I
Sbjct: 117 ALWLVGYMHFSFAWIVMILMIFVSWQFEIEKKTKHRENMVQ-AHMSSYIDKI 167
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 509 PVQPFGSFDVRGRIPMKASRQVSLVSHLFQKTVQRPLR 396
P+QP+GS+D+ GR M +Q + +Q+ P R
Sbjct: 977 PMQPYGSYDMWGRFAMSGPQQQQQQALAWQQDQYEPQR 1014
>SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 431
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 467 PMKASRQVSLVSHLFQKTVQRPLRCCVCIRS 375
P + SR L H+ T Q+P +C +C+R+
Sbjct: 311 PRRFSRSDELTRHMRTHTGQKPFQCRICMRN 341
>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 669
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 467 PMKASRQVSLVSHLFQKTVQRPLRCCVCIRS 375
P + SR L H+ T Q+P +C +C+R+
Sbjct: 549 PRRFSRSDELTRHMRTHTGQKPFQCRICMRN 579
>SB_58127| Best HMM Match : DUF1605 (HMM E-Value=0.17)
Length = 231
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 427 FFRRQCSDLCDVAFVFVLLAPLIAHHRQYNGPNKPRNAPLHIT 299
F+RR D CD AF+ + + + A + KP A I+
Sbjct: 160 FYRRFYQDFCDTAFIEIYIGVVTAQSMEKKHFKKPLKASFEIS 202
>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
Length = 442
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 295 SRLYAMERCVAYWARYIVGDARSMAQGERIQTQHRKGRC 411
+R Y M RYIVG+ +S++Q RI K RC
Sbjct: 339 NRRYFMRESDINPERYIVGNNKSISQSPRILVPAAKPRC 377
>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 206 RQFCLHLPCYYHWPCCTKLLRRCRCFRD 123
RQFC+H+P K L RC CFR+
Sbjct: 854 RQFCIHIP--------GKYLTRCECFRN 873
>SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)
Length = 659
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +2
Query: 323 WLIGPVILSVMRDQWRKENEYKRNIAK 403
W + P +L+ +++Q++KE + K+N+ +
Sbjct: 247 WDVDPSMLAKLKEQYKKERKSKKNVKR 273
>SB_43254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 325 AYWARYIVGDARSMAQGERIQTQ--HRKGRCTVF*K--RCDTSET*RLAFMGILPRTSNE 492
A W+ GD A GE +T+ + RC +F RCD E RL +G+ +NE
Sbjct: 19 ASWSDDGAGDILCTAVGEYARTRLVYMSQRCPMFSTVARCDMEEVSRLITLGMDVNATNE 78
>SB_2931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 471 NTHEGKSSSLASITSFSEDSAATFAMLRLYSFSLRH*SRITDNITGPIS 325
N EG ++SFSED + M R +F R+ +TG S
Sbjct: 97 NEEEGVEKMQLLVSSFSEDQLNRYEMYRRAAFPKAAIKRLMQGVTGGTS 145
>SB_31278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 29
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +2
Query: 323 WLIGPVILSVMRDQWRKENEYKRNI 397
W + P +L+ +++Q++KE + K+N+
Sbjct: 3 WDVDPSMLAKLKEQYKKERKSKKNV 27
>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 176 YHWPCCTKLLRRCRCFRD*NVF 111
Y +PCC+K R+ R D N F
Sbjct: 21 YAYPCCSKCRRKIRTLDDENTF 42
>SB_24067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 370 APLIAHHRQYNGPNKPRNAPLHITY*VHSSYNRHLFEKCVHHR 242
A LI H R +G N+ R +PL + Y+RH VH R
Sbjct: 172 ARLIVHSR--HGENRVRTSPLSYNKQQNPPYSRHKARLIVHSR 212
>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 413 VQRPLRCCVCIRSPCAIDRAS 351
V+R RCCVC S C + R S
Sbjct: 178 VRRLTRCCVCRLSRCCVRRLS 198
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,002,357
Number of Sequences: 59808
Number of extensions: 350862
Number of successful extensions: 1145
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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