Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    48   5e-06
U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.       30   0.87 
L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine t...    30   0.87 
AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated...    30   0.87 
U64846-7|AAG24116.2|  327|Caenorhabditis elegans Serpentine rece...    29   2.7  
U64846-3|AAG24114.1|  327|Caenorhabditis elegans Serpentine rece...    29   2.7  
AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine re...    28   4.7  
Z81525-3|CAB04258.1|  467|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +2

Query: 290 YLVGYMQWSVAWLIGPVILSVMRDQ-WRKENEYKRNIAKVAALSSEKDVILARLDDLPSW 466
           + +G   +S  W++  +I SV +   WRK    +R IA  A    E++VI+A+L DLP+W
Sbjct: 21  FFLGKWDYSFVWVLIIIIASVTKSYLWRKRE--RRLIALRATALREREVIMAQLQDLPAW 78

Query: 467 VFFP 478
           V FP
Sbjct: 79  VQFP 82



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 477 PDVERAEWLNRILLQ 521
           PD ER EWLN+++ Q
Sbjct: 82  PDTERVEWLNKVIHQ 96


>U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.
          Length = 532

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 263 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 367
           + VS+ G+VY +  + +S+A+  GP+I   +   W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425


>L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine
           transporter protein.
          Length = 532

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 263 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 367
           + VS+ G+VY +  + +S+A+  GP+I   +   W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425


>AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated
           protein 17, isoform a protein.
          Length = 532

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 263 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 367
           + VS+ G+VY +  + +S+A+  GP+I   +   W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425


>U64846-7|AAG24116.2|  327|Caenorhabditis elegans Serpentine
           receptor, class t protein37 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 190 TCHVIITGHAALNYCGVAGVFVIKTYSEQIRKLF 89
           TC VI+ GHA   +   A VF+    +EQIRK F
Sbjct: 270 TC-VILIGHALWQFVQGAPVFIYIGLNEQIRKRF 302


>U64846-3|AAG24114.1|  327|Caenorhabditis elegans Serpentine
           receptor, class t protein36 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 190 TCHVIITGHAALNYCGVAGVFVIKTYSEQIRKLF 89
           TC VI+ GHA   +   A VF+    +EQIRK F
Sbjct: 270 TC-VILIGHALWQFVQGAPVFIYIGLNEQIRKRF 302


>AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine
           receptor, class t protein6 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 230 NSVFSMMYTFLKKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 367
           N  F + + F KKV       LVGY  WS+ +   PV+ SV    W
Sbjct: 138 NPNFPLEFVFRKKVFYFVLGALVGYSFWSLLF-TKPVLFSVEYSCW 182


>Z81525-3|CAB04258.1|  467|Caenorhabditis elegans Hypothetical
           protein F33A8.4 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 187 RCKQNCLTTRQ**WQQCFFYDVHISQKGVDCRSCVLSRLYAMERCV 324
           RC Q C +  Q  W  C   D  +  + V C  C    LY   RC+
Sbjct: 420 RC-QACTSVEQGKWNHCEKCDKCVKPRYVHCAQCARCHLYG--RCI 462


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,458,943
Number of Sequences: 27780
Number of extensions: 259406
Number of successful extensions: 617
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)