Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r...    28   3.3  
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r...    28   3.3  
At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    28   3.3  
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR...    28   4.4  
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical...    28   4.4  
At3g62010.1 68416.m06964 expressed protein                             27   5.8  
At1g69860.1 68414.m08040 proton-dependent oligopeptide transport...    27   5.8  
At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR...    27   7.7  

>At5g35210.2 68418.m04175 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1409

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = +2

Query: 158 CSMASDNNMAGASKTALPPGSDDGNSVFSMMYTFLKKVSIVGAV--YLVGYMQWSVAWLI 331
           C + S +        A+   +     +FS ++       ++ ++  Y++ Y++ S+  LI
Sbjct: 730 CRLTSASRRGCMLNAAVAGATKGAMKIFSGLFPLKNGEGVLSSIAAYIL-YLEESLRGLI 788

Query: 332 -GPVILSVMRDQWRKENEYKRNIAKVA 409
            GP +    R QWRK+ E   NI  +A
Sbjct: 789 AGPFLSESPRKQWRKQLE--ENICSIA 813


>At5g35210.1 68418.m04174 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1576

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = +2

Query: 158 CSMASDNNMAGASKTALPPGSDDGNSVFSMMYTFLKKVSIVGAV--YLVGYMQWSVAWLI 331
           C + S +        A+   +     +FS ++       ++ ++  Y++ Y++ S+  LI
Sbjct: 730 CRLTSASRRGCMLNAAVAGATKGAMKIFSGLFPLKNGEGVLSSIAAYIL-YLEESLRGLI 788

Query: 332 -GPVILSVMRDQWRKENEYKRNIAKVA 409
            GP +    R QWRK+ E   NI  +A
Sbjct: 789 AGPFLSESPRKQWRKQLE--ENICSIA 813


>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1183

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 244 YDVHISQKGVDCRSCVLSRLYAMER 318
           YDV +S +GVD R  ++S LY   R
Sbjct: 15  YDVFLSFRGVDTRQTIVSHLYVALR 39


>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1188

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 244 YDVHISQKGVDCRSCVLSRLY-AMERC 321
           YDV +S +G D R   LS LY ++ RC
Sbjct: 14  YDVFVSFRGADVRKNFLSHLYDSLRRC 40


>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
            EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
            member of the natural resistance-associated macrophage
            protein (NRAMP) metal transporter family, PMID:11500563;
            metal transport capacity has not been shown,
            PMID:11500563, PMID:1038174
          Length = 1294

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 476  GRIPMKASRQVSLVSHLFQKTVQRPLRCCVCIRSPCAIDRASPT 345
            G+     +R   ++   F K ++ P+  C C++ P +  RASPT
Sbjct: 1159 GKYTYVLNRLQGVIDPAFSK-LRTPMTPCFCLQIPASHQRASPT 1201


>At3g62010.1 68416.m06964 expressed protein
          Length = 1254

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +2

Query: 305  MQWSVAWLIGPVILSVMRDQWRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFPGR 484
            M+WS+   + P     + ++ R ++E +   A + ++ +E+   +     +    FFPG+
Sbjct: 834  MKWSIR--LRPGRFFTIPEELRAQHESQHGDAVMESIVNERSGSVLSKGSILKMYFFPGQ 891

Query: 485  RTSRMVE 505
            RTS  ++
Sbjct: 892  RTSSRLQ 898


>At1g69860.1 68414.m08040 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 555

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 215 GSDDGNSVFSMMYTFLKKVSIVGAVYLVGYMQWSVAWLIGPVILSVM 355
           G +   S FS  YT    V +V ++ LV Y+Q +++W IG  I +V+
Sbjct: 174 GREGSRSFFSWYYTTHTIVQLV-SMTLVLYVQNNISWGIGFAIPTVL 219


>At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1025

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 244 YDVHISQKGVDCRSCVLSRLYA 309
           YDV +S +G D R  ++S LYA
Sbjct: 12  YDVFLSFRGEDTRKTIVSHLYA 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,405,014
Number of Sequences: 28952
Number of extensions: 226846
Number of successful extensions: 572
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)