Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   145   4e-36
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    28   0.97 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   3.0  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   5.2  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   6.8  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  145 bits (351), Expect = 4e-36
 Identities = 69/142 (48%), Positives = 89/142 (62%)
 Frame = +3

Query: 3   RAEFFQALSIPTXISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 182
           +  FFQAL IPT I++GTIEI +DVH++    KVG SEATLLNMLNISPF+YG+ V  +Y
Sbjct: 132 KTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIY 191

Query: 183 DSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXX 362
           D G +F+PEILD+  EDL     +  + + A+SL   YPTI S  HS+ N +KNL+    
Sbjct: 192 DQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSL 251

Query: 363 XXXXXXXXXXXXKEFIKDPSKF 428
                       K F+ DPS F
Sbjct: 252 ATEYTFEGTEQTKAFLADPSAF 273


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = -1

Query: 413 LNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSSLELGTE 234
           L  L+ G S+       SSDG    + + + ++  + SWV  ++R S  IS S  E+  +
Sbjct: 82  LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140

Query: 233 IFWFDVQNF 207
              FD++ F
Sbjct: 141 ---FDIEAF 146


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 392 GSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSS 252
           G FF  + CD + G K  +   N       S   N   K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -1

Query: 416  VLNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSSLELGT 237
            V   L D G   +  +C+ +D  ++++T    +     ++++    KS  + N   EL T
Sbjct: 1016 VNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELAT 1075

Query: 236  EI 231
            E+
Sbjct: 1076 EL 1077


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 244 LARRSSGLMSRISGAKIVPESYTCLTTR 161
           LAR SS      SGAK+VP+ +  +T +
Sbjct: 276 LARVSSSFGRPTSGAKVVPQIHNTVTVQ 303


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 64  SSTMYTS*SPVTRLELLKPPFST 132
           +STMY S  P +     KPP+ T
Sbjct: 90  ASTMYASPPPSSNYNTAKPPYQT 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,006
Number of Sequences: 5004
Number of extensions: 35135
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)