Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307E10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 167 5e-42
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 167 5e-42
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 166 1e-41
03_02_0966 + 12783515-12783901 30 1.3
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 1.7
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 29 2.3
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 2.3
06_03_1442 - 30172595-30172606,30172607-30172684,30173034-301734... 29 3.0
06_03_1439 - 30157110-30157121,30157122-30157199,30157549-301579... 29 3.0
06_03_1427 - 30090464-30090475,30090476-30090553,30090903-300913... 29 3.0
06_03_1422 + 30058936-30058975,30059057-30059233,30060848-300610... 29 3.0
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 27 6.9
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857... 27 6.9
03_05_0983 - 29402261-29402436,29402711-29402855,29402941-294030... 27 9.1
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 167 bits (406), Expect = 5e-42
Identities = 78/142 (54%), Positives = 101/142 (71%)
Frame = +3
Query: 3 RAEFFQALSIPTXISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 182
+ FFQ L+IPT I+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VY
Sbjct: 137 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVY 196
Query: 183 DSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXX 362
DSG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L
Sbjct: 197 DSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAV 256
Query: 363 XXXXXXXXXXXXKEFIKDPSKF 428
KE++KDPSKF
Sbjct: 257 ETEYSYPHADKIKEYLKDPSKF 278
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 167 bits (406), Expect = 5e-42
Identities = 78/142 (54%), Positives = 101/142 (71%)
Frame = +3
Query: 3 RAEFFQALSIPTXISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 182
+ FFQ L+IPT I+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VY
Sbjct: 137 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVY 196
Query: 183 DSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXX 362
DSG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L
Sbjct: 197 DSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAV 256
Query: 363 XXXXXXXXXXXXKEFIKDPSKF 428
KE++KDPSKF
Sbjct: 257 ETEYSYPHADKIKEYLKDPSKF 278
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 166 bits (403), Expect = 1e-41
Identities = 77/142 (54%), Positives = 101/142 (71%)
Frame = +3
Query: 3 RAEFFQALSIPTXISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 182
+ FFQ L+IPT I+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VY
Sbjct: 137 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVY 196
Query: 183 DSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXX 362
DSG++F+PE+LD+ +DL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L
Sbjct: 197 DSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAV 256
Query: 363 XXXXXXXXXXXXKEFIKDPSKF 428
KE++KDPSKF
Sbjct: 257 ETEYSYPHADKIKEYLKDPSKF 278
>03_02_0966 + 12783515-12783901
Length = 128
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 252 AGVANVAALSLAIGYPTIASAPHSIANGFKNLL 350
AG+A VAA++ A+ P +A A +++ KN L
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFL 99
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +3
Query: 60 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 212
E++ +++P D VG S +++ +++ P+S VV+ +Y+S + A +I
Sbjct: 346 EMLPSGFLIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKI 395
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 225 PEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 341
PE RA F AG A V A +P A+A +S GF+
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFR 73
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 190 PESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL 68
PE LT RP +G+ FN LR ++ +PT G + S+
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQKTVSM 397
>06_03_1442 -
30172595-30172606,30172607-30172684,30173034-30173435,
30173503-30173577,30173667-30173822,30173952-30174143,
30174202-30174208,30175866-30175918
Length = 324
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +3
Query: 60 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI--LDIKPED 233
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I K +
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 167
Query: 234 LRAKFQAGVANVAALSLAIGYPTIASAPHSIA 329
LR Q VA S+ G+ +A H+++
Sbjct: 168 LRCLRQ--VAYKDTRSVITGWGRKLAALHALS 197
>06_03_1439 -
30157110-30157121,30157122-30157199,30157549-30157950,
30158018-30158092,30158182-30158337,30158467-30158658,
30158717-30158723,30160381-30160433
Length = 324
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +3
Query: 60 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI--LDIKPED 233
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I K +
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 167
Query: 234 LRAKFQAGVANVAALSLAIGYPTIASAPHSIA 329
LR Q VA S+ G+ +A H+++
Sbjct: 168 LRCLRQ--VAYKDTRSVITGWGRKLAALHALS 197
>06_03_1427 -
30090464-30090475,30090476-30090553,30090903-30091304,
30091372-30091446,30091536-30091691,30091821-30092012,
30093735-30093908,30094966-30095123,30096738-30096914,
30096996-30097035
Length = 487
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +3
Query: 60 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI--LDIKPED 233
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I K +
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 330
Query: 234 LRAKFQAGVANVAALSLAIGYPTIASAPHSIA 329
LR Q VA S+ G+ +A H+++
Sbjct: 331 LRCLRQ--VAYKDTRSVITGWGRKLAALHALS 360
>06_03_1422 +
30058936-30058975,30059057-30059233,30060848-30061005,
30062063-30062236,30063959-30064150,30064280-30064435,
30064525-30064599,30064667-30065068,30065418-30065495,
30065840-30066173,30066275-30066339
Length = 616
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +3
Query: 60 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI--LDIKPED 233
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I K +
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 330
Query: 234 LRAKFQAGVANVAALSLAIGYPTIASAPHSIA 329
LR Q VA S+ G+ +A H+++
Sbjct: 331 LRCLRQ--VAYKDTRSVITGWGRKLAALHALS 360
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 87 KPGDKVGASEATLLNMLNISPFS--YGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGV 260
KP D V +S TLL N + FS Y L +++ + A D +++ K Q G+
Sbjct: 423 KPSDVVASSYVTLLQAANYATFSLDYALELEERLRARERDAAAEADAMRKEVEEKAQRGL 482
Query: 261 ANVAALSL 284
A A ++
Sbjct: 483 AAAKAAAV 490
>01_06_1676 -
39084928-39085016,39085462-39085555,39085664-39085750,
39085941-39086073,39086451-39086724,39086863-39086989,
39087095-39087345,39087476-39087575
Length = 384
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 153 SYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 278
SYG V V DSGT A + LD + ++F VA V+ L
Sbjct: 83 SYGRVYYAVLDSGTKIAVKKLDSNENEPTSEFLTQVALVSRL 124
>03_05_0983 -
29402261-29402436,29402711-29402855,29402941-29403063,
29403280-29403579
Length = 247
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -2
Query: 166 TRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPFEXLVGIERAWKNSAR 2
TRP + E LRRV ++ TLS + +++ S+ P + LV W + +R
Sbjct: 156 TRPLQ--EAMEFLRRVETQLNTLSISGRSLRNILSSVNPADDLVCWLGVWCSKSR 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,089,495
Number of Sequences: 37544
Number of extensions: 239954
Number of successful extensions: 570
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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