Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)         52   3e-07
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)            28   4.1  
SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)                      27   7.1  
SB_7586| Best HMM Match : 7tm_1 (HMM E-Value=0.2)                      27   9.4  
SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)                 27   9.4  
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 22/36 (61%), Positives = 30/36 (83%)
 Frame = +3

Query: 3   RAEFFQALSIPTXISKGTIEIINDVHILKPGDKVGA 110
           +  FFQAL+IPT I++GTIEIINDVH++K  +K+ A
Sbjct: 116 KTSFFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
          Length = 320

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +3

Query: 102 VGASEATLLNMLNISPFSYGLVVKQVYD---SGTIFAP-EILDIKPEDLRAKFQAGVANV 269
           +  S +  + +L +SP  YG+    +     +G +F    IL + PE + +   A VA  
Sbjct: 82  IAGSSSVYIGLLGLSPAQYGITFAAIVSALIAGALFTQRRILQLGPEKIVSIGAALVATG 141

Query: 270 AALSLAI 290
           A  +LAI
Sbjct: 142 ALTTLAI 148


>SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 145 LHSHMVLLLSRYMILELFLHLKFWTSNQKIS 237
           L S +++++ RY+ +   LH + W S +K+S
Sbjct: 145 LLSMLLMMVDRYIAIAWGLHYRIWKSQRKVS 175


>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
          Length = 939

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 211 ISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFK 83
           +S + +VP+SY    TRP  NG+   +  + A E P+L+  F+
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFE 201


>SB_7586| Best HMM Match : 7tm_1 (HMM E-Value=0.2)
          Length = 362

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 160 VLLLSRYMILELFLHLKFWTSNQKISV 240
           +++L R +++   +  KFW + +K+SV
Sbjct: 61  MMMLDRLLVIRCGMRYKFWMTTEKVSV 87


>SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +2

Query: 239 CQVPSWXXXXXXXFFGYWLPNYCFSPAFHCQWFQEPFGH 355
           C  P           GYW+ NYC     +CQ     FGH
Sbjct: 318 CNTPDSYIGIGAKQSGYWVGNYCMQ---YCQVKLAAFGH 353


>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
          Length = 1197

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 113 RSSNLVTGLQDVYIVDDFNSTL 48
           R  NLVT L DVYI  ++ S L
Sbjct: 295 RDKNLVTNLSDVYIGSNYRSIL 316


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 123 LLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVA 263
           +   +N+       +V   YD   +    I+D KP+DLR    A VA
Sbjct: 83  MFKKVNVGFVDMSFIVLHPYDIACVQVLVIIDAKPKDLRLPTDAYVA 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,553,231
Number of Sequences: 59808
Number of extensions: 263538
Number of successful extensions: 588
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)