Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E10f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   225   4e-59
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   225   4e-59
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   225   4e-59
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   225   4e-59
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    31   0.95 
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    31   0.95 
AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-P...    29   3.8  

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  225 bits (549), Expect = 4e-59
 Identities = 110/142 (77%), Positives = 119/142 (83%)
 Frame = +3

Query: 3   RAEFFQALSIPTXISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 182
           +  FFQALSIPT ISKGTIEIINDV ILKPGDKVGASEATLLNMLNISPFSYGL+V QVY
Sbjct: 134 KTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVY 193

Query: 183 DSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXX 362
           DSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAPHSIANGFKNLL    
Sbjct: 194 DSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAA 253

Query: 363 XXXXXXXXXXXXKEFIKDPSKF 428
                       KE+IKDPSKF
Sbjct: 254 TTEVEFKEATTIKEYIKDPSKF 275


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  225 bits (549), Expect = 4e-59
 Identities = 110/142 (77%), Positives = 119/142 (83%)
 Frame = +3

Query: 3   RAEFFQALSIPTXISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 182
           +  FFQALSIPT ISKGTIEIINDV ILKPGDKVGASEATLLNMLNISPFSYGL+V QVY
Sbjct: 134 KTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVY 193

Query: 183 DSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXX 362
           DSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAPHSIANGFKNLL    
Sbjct: 194 DSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAA 253

Query: 363 XXXXXXXXXXXXKEFIKDPSKF 428
                       KE+IKDPSKF
Sbjct: 254 TTEVEFKEATTIKEYIKDPSKF 275


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  225 bits (549), Expect = 4e-59
 Identities = 110/142 (77%), Positives = 119/142 (83%)
 Frame = +3

Query: 3   RAEFFQALSIPTXISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 182
           +  FFQALSIPT ISKGTIEIINDV ILKPGDKVGASEATLLNMLNISPFSYGL+V QVY
Sbjct: 134 KTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVY 193

Query: 183 DSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXX 362
           DSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAPHSIANGFKNLL    
Sbjct: 194 DSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAA 253

Query: 363 XXXXXXXXXXXXKEFIKDPSKF 428
                       KE+IKDPSKF
Sbjct: 254 TTEVEFKEATTIKEYIKDPSKF 275


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  225 bits (549), Expect = 4e-59
 Identities = 110/142 (77%), Positives = 119/142 (83%)
 Frame = +3

Query: 3   RAEFFQALSIPTXISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 182
           +  FFQALSIPT ISKGTIEIINDV ILKPGDKVGASEATLLNMLNISPFSYGL+V QVY
Sbjct: 134 KTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVY 193

Query: 183 DSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXX 362
           DSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAPHSIANGFKNLL    
Sbjct: 194 DSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAA 253

Query: 363 XXXXXXXXXXXXKEFIKDPSKF 428
                       KE+IKDPSKF
Sbjct: 254 TTEVEFKEATTIKEYIKDPSKF 275


>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
            Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
 Frame = +3

Query: 42   ISKGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEIL 215
            + K T EI ++ ++ +    D+V       LN  +I  F +G  +   YD G ++   IL
Sbjct: 769  LQKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGIL 827

Query: 216  DIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 347
            D+     R + QAG+ +++ + +A   P      H   + FKN+
Sbjct: 828  DLDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 868


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
           DNA polymerase protein.
          Length = 1000

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
 Frame = +3

Query: 42  ISKGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEIL 215
           + K T EI ++ ++ +    D+V       LN  +I  F +G  +   YD G ++   IL
Sbjct: 532 LQKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGIL 590

Query: 216 DIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 347
           D+     R + QAG+ +++ + +A   P      H   + FKN+
Sbjct: 591 DLDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 631


>AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-PA,
           isoform A protein.
          Length = 1788

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 184 SYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPF 47
           +Y+C T   Y +  M + LR +  E P++ PG  + TSL  S   F
Sbjct: 824 AYSCDTEGYYTSFHMDSGLRTLKEEEPSVMPGTPLQTSLHTSSYSF 869


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,882,602
Number of Sequences: 53049
Number of extensions: 402316
Number of successful extensions: 866
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)