Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      162   1e-40
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   159   1e-39
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   157   3e-39
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con...    33   0.088
At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containi...    28   4.4  

>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  162 bits (393), Expect = 1e-40
 Identities = 76/142 (53%), Positives = 99/142 (69%)
 Frame = +3

Query: 3   RAEFFQALSIPTXISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 182
           +  FFQ L+IPT I+KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VY
Sbjct: 137 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVY 196

Query: 183 DSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXX 362
           D+G++F PE+L++  +DL  KF AGV+ + ALSLAI YPT+A+APH   N +KN+L    
Sbjct: 197 DNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVAL 256

Query: 363 XXXXXXXXXXXXKEFIKDPSKF 428
                       KEF+KDP+KF
Sbjct: 257 ATEYSFPQAENVKEFLKDPTKF 278


>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  159 bits (385), Expect = 1e-39
 Identities = 73/142 (51%), Positives = 98/142 (69%)
 Frame = +3

Query: 3   RAEFFQALSIPTXISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 182
           +  FFQ L+IPT I+KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VY
Sbjct: 136 QTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVY 195

Query: 183 DSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXX 362
           D+G++F+PE+LD+  + L  KF +G++ V +L+LA+ YPT+A+APH   N +KN L    
Sbjct: 196 DNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAV 255

Query: 363 XXXXXXXXXXXXKEFIKDPSKF 428
                       KEF+KDPSKF
Sbjct: 256 ATDYTFPQAEKVKEFLKDPSKF 277


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  157 bits (382), Expect = 3e-39
 Identities = 72/142 (50%), Positives = 98/142 (69%)
 Frame = +3

Query: 3   RAEFFQALSIPTXISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 182
           +  FFQ L+IPT I+KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VY
Sbjct: 136 QTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVY 195

Query: 183 DSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXX 362
           D+G++F+PE+LD+  + L  KF +G++ V +L+LA+ YPT+A+APH   N +KN L    
Sbjct: 196 DNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAV 255

Query: 363 XXXXXXXXXXXXKEFIKDPSKF 428
                       KE++KDPSKF
Sbjct: 256 ATEYTFPQAEKVKEYLKDPSKF 277


>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
           contains similarity to 60S acidic ribosomal protein
           GI:5815233 from [Homo sapiens]
          Length = 235

 Score = 33.5 bits (73), Expect = 0.088
 Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +3

Query: 24  LSIPTXISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYGLVVKQVYDSGTI 197
           L +P  ++KGT+E++ D  + + G ++    A +L +L   ++ F   L+ +       +
Sbjct: 157 LEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFEL 216

Query: 198 FAPEILDIKPEDL 236
           +  ++ ++  EDL
Sbjct: 217 YREDLSELYREDL 229


>At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 632

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 27/98 (27%), Positives = 42/98 (42%)
 Frame = +3

Query: 54  TIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPED 233
           TIEI N VH  + GD+  +    +  ML         + +++   G  + P    +  +D
Sbjct: 502 TIEIENKVHEFRAGDREHSKSKEIYTMLR-------KISERIKSHG--YVPNTNTVL-QD 551

Query: 234 LRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 347
           L    +     V +  LAI Y  I++ P S    FKNL
Sbjct: 552 LEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNL 589


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,625,995
Number of Sequences: 28952
Number of extensions: 190646
Number of successful extensions: 457
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)