Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E08f
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    71   1e-13
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    34   0.014
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo...    29   0.29 
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   1.6  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   3.6  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   6.3  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    25   6.3  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.3  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   8.3  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   8.3  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   8.3  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 34/80 (42%), Positives = 51/80 (63%)
 Frame = -1

Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
           +CRY ++DFE+ +  +G      + K+  +SW PD A +K KM+YSSS D L+++  G+ 
Sbjct: 61  DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIG 114

Query: 275 KYIQATDLSEASQEAVEEKL 216
             IQATD SE + E V EK+
Sbjct: 115 TDIQATDFSEVAYETVLEKV 134


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 33.9 bits (74), Expect = 0.014
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = -1

Query: 392 SKKQKLFLMSWCPDTAKVKKKMLYSSS 312
           SKK  L L+S+ P+ A V++KMLY+SS
Sbjct: 76  SKKNLLQLISYVPENANVRRKMLYASS 102



 Score = 28.7 bits (61), Expect = 0.51
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = -1

Query: 380 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 228
           K+  +  CP  A VK +M+YSSS     D++K  L + +   I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299


>SPAC17H9.11 |||cofilin/tropomyosin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -1

Query: 404 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 225
           T++      LF++ W P        M+Y+S+     + +  V K  +A D  + + EAV+
Sbjct: 79  TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAVD 137

Query: 224 EKL 216
           E L
Sbjct: 138 EFL 140


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 314 SFDALKKSLVGVQKYIQATDLSEASQ 237
           S +AL++ L G + Y+Q+TD++  S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +1

Query: 361 HDIRKSFCFLLASDVPWHWCVYSKSNRPY-----LHSPVPPFCR 477
           HD+     +++ S   +H C  ++S  P+     LH+P+P  C+
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQ 150


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 204 SPINSIYTRARDETEPALRHSCPDDTRPRHH*PLSIITKEN 82
           SP+++      D ++PAL  S      P+H   LS   KEN
Sbjct: 391 SPLSTPLKAQFDPSKPALNRSIDHQKTPQHKRYLSTEFKEN 431


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +3

Query: 21  YPRGLTRGPTTSKINHINTIRFPL**Y*AASGVV 122
           YP  LT   TT K  H  +IRF    Y  ASG+V
Sbjct: 14  YPEALT---TTLKHGHATSIRFSTNGYHLASGLV 44


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 23/95 (24%), Positives = 35/95 (36%)
 Frame = -1

Query: 434 DFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATD 255
           +F+   Q   T  A+K     +    P T    K  + ++   A KK + G +KY    +
Sbjct: 120 NFKRRTQFAFTGRATKSNAGVMDVQSPSTMSTSKNNVRNAERPASKKPVFGSKKYFDVIN 179

Query: 254 LSEASQEAVEEKLRATHRQ*TAFTHELATKPNPLS 150
            S    +  E K R   R  + FT         LS
Sbjct: 180 DSNVENKE-ETKDRNLDRALSKFTQSREKNEQNLS 213


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 362 TTSGRASVSC*PPT 403
           TTSG  S SC PPT
Sbjct: 179 TTSGSTSTSCPPPT 192


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -3

Query: 252 LGSVSGGRRREAPRHPSPINSIYTRARDE---TEPALRHSCPDDTRPRHH*PLSIITKEN 82
           LG   G ++ E+ R   P  S    +       EP +RHS     RP+ H   S +T+++
Sbjct: 20  LGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSNEPIIRHSSVKTDRPQFHRADSTVTEQS 79


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 392 SKKQKLFLMSWCPDTAKVKKKMLYSS-SFDA-LKKSLVGVQKYIQATDLSEASQEAVEEK 219
           S    +F    CP +  +  ++ ++S  F A L  + + V K+   TDL    +E + + 
Sbjct: 259 STNATVFSTLMCPGSLIISDELNHTSIRFGARLSGANIRVYKHNDMTDLERVLREVISQG 318

Query: 218 LRATHR 201
              THR
Sbjct: 319 QPRTHR 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,830
Number of Sequences: 5004
Number of extensions: 35329
Number of successful extensions: 108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)