Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307E08f
(494 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 78 4e-15
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 78 4e-15
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 77 5e-15
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 76 1e-14
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 76 2e-14
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 75 3e-14
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 73 8e-14
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 72 2e-13
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 71 3e-13
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 69 2e-12
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 65 2e-11
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 62 2e-10
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 62 2e-10
At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3) id... 39 0.002
At5g63320.1 68418.m07946 expressed protein 31 0.32
At5g11430.1 68418.m01335 transcription elongation factor-related... 29 2.3
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 29 2.3
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 28 4.0
At4g23550.1 68417.m03393 WRKY family transcription factor contai... 27 5.3
At3g60410.2 68416.m06757 expressed protein 27 5.3
At3g60410.1 68416.m06756 expressed protein 27 5.3
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa... 27 5.3
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 27 6.9
At5g55510.1 68418.m06914 mitochondrial import inner membrane tra... 27 9.2
At4g08350.1 68417.m01380 KOW domain-containing transcription fac... 27 9.2
At2g23190.1 68415.m02770 cytochrome P450, putative Similar to C... 27 9.2
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 77.8 bits (183), Expect = 4e-15
Identities = 33/80 (41%), Positives = 54/80 (67%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
ECRY ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q
Sbjct: 57 ECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQ 111
Query: 275 KYIQATDLSEASQEAVEEKL 216
+QATD +E + ++ ++
Sbjct: 112 VELQATDPTEMDLDVLKSRV 131
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 77.8 bits (183), Expect = 4e-15
Identities = 33/80 (41%), Positives = 54/80 (67%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
ECRY ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q
Sbjct: 64 ECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQ 118
Query: 275 KYIQATDLSEASQEAVEEKL 216
+QATD +E + ++ ++
Sbjct: 119 VELQATDPTEMDLDVLKSRV 138
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 77.4 bits (182), Expect = 5e-15
Identities = 34/80 (42%), Positives = 55/80 (68%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
ECRY ++DF++T T + +K K+F ++W PDT++V+ KMLY+SS D K+ + G+Q
Sbjct: 64 ECRYAVYDFDFT-----TEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQ 118
Query: 275 KYIQATDLSEASQEAVEEKL 216
+QATD SE S + ++ +L
Sbjct: 119 VELQATDPSEMSLDIIKGRL 138
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 76.2 bits (179), Expect = 1e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
ECRY ++D+++T T E +K K+F ++W PDT++V+ KMLY+SS D K+ L G+Q
Sbjct: 64 ECRYAVYDYDFT-----TPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQ 118
Query: 275 KYIQATDLSEASQEAVEEKL 216
+QATD SE S + ++ ++
Sbjct: 119 VELQATDPSEMSLDIIKGRV 138
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 75.8 bits (178), Expect = 2e-14
Identities = 33/70 (47%), Positives = 49/70 (70%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
ECRY ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q
Sbjct: 64 ECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQ 118
Query: 275 KYIQATDLSE 246
+QATD +E
Sbjct: 119 VELQATDPTE 128
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 74.9 bits (176), Expect = 3e-14
Identities = 33/79 (41%), Positives = 55/79 (69%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
ECRY ++DF++T T+E +K K+F ++W PD+++V+ KM+Y+SS D K+ L G+Q
Sbjct: 62 ECRYAVYDFDFT-----TAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQ 116
Query: 275 KYIQATDLSEASQEAVEEK 219
+QATD SE S + ++ +
Sbjct: 117 VELQATDPSEMSLDIIKSR 135
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 73.3 bits (172), Expect = 8e-14
Identities = 33/79 (41%), Positives = 53/79 (67%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
ECRY +FDF++ T E +K K+F ++W PD+++V+ KM+Y+SS D K+ L G+Q
Sbjct: 55 ECRYAVFDFDFI-----TDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQ 109
Query: 275 KYIQATDLSEASQEAVEEK 219
+QATD SE S + ++ +
Sbjct: 110 VELQATDPSEMSFDIIKSR 128
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 71.7 bits (168), Expect = 2e-13
Identities = 32/79 (40%), Positives = 52/79 (65%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
+CRY ++DF++ T+E +K K+F ++W PDTAKV+ KM+Y+SS D K+ L G+Q
Sbjct: 62 DCRYCIYDFDFV-----TAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQ 116
Query: 275 KYIQATDLSEASQEAVEEK 219
+QATD +E + + +
Sbjct: 117 VELQATDPTEMGLDVFKSR 135
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 71.3 bits (167), Expect = 3e-13
Identities = 31/79 (39%), Positives = 51/79 (64%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
ECRY +FDF++ +SE + ++F ++W PDTA+V+ KM+Y+SS D K+ L G+Q
Sbjct: 64 ECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQ 118
Query: 275 KYIQATDLSEASQEAVEEK 219
+QATD +E + + +
Sbjct: 119 VELQATDPTEMDLDVFKSR 137
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 68.5 bits (160), Expect = 2e-12
Identities = 31/79 (39%), Positives = 49/79 (62%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
+CRY ++DF++ TSE +K K+F +W P T+ ++ K+LYS+S D L + L G+
Sbjct: 71 DCRYAVYDFDFV-----TSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIH 125
Query: 275 KYIQATDLSEASQEAVEEK 219
IQATD +E E + E+
Sbjct: 126 YEIQATDPTEVDLEVLRER 144
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 65.3 bits (152), Expect = 2e-11
Identities = 26/81 (32%), Positives = 53/81 (65%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
+CRY +FDF++ T + +K K+F ++W P+ +K++ K+LY++S D L++ L G+
Sbjct: 68 DCRYAVFDFDFV-----TVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIH 122
Query: 275 KYIQATDLSEASQEAVEEKLR 213
+QATD +E + ++++ +
Sbjct: 123 YELQATDPTEMGFDIIQDRAK 143
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 62.5 bits (145), Expect = 2e-10
Identities = 25/81 (30%), Positives = 52/81 (64%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
+CRY +FDF+Y T + + K+F ++W P+ +++++KM+Y++S L++ L GV
Sbjct: 55 DCRYAVFDFDYV-----TVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVH 109
Query: 275 KYIQATDLSEASQEAVEEKLR 213
+QATD +E + ++++ +
Sbjct: 110 YELQATDPTEMGFDKIQDRAK 130
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 62.1 bits (144), Expect = 2e-10
Identities = 29/80 (36%), Positives = 48/80 (60%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
ECRY + D E+ ++K+ ++W P TAK++KKM+YSS+ D K+ L G+Q
Sbjct: 62 ECRYAILDIEFV---------PGERKICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQ 112
Query: 275 KYIQATDLSEASQEAVEEKL 216
ATDL++ S +A+ ++
Sbjct: 113 VEFHATDLTDISLDAIRRRI 132
>At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 124
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = -1
Query: 455 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 276
ECRY +FDF++ +SE + ++F ++W PDTA+ + L G+Q
Sbjct: 64 ECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTAR---------------RELDGIQ 103
Query: 275 KYIQATDLSEASQEAVEEK 219
+QATD +E + + +
Sbjct: 104 VELQATDPTEMDLDVFKSR 122
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 31.5 bits (68), Expect = 0.32
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -3
Query: 354 GHRQGQEEDVVL*LVRRSEKVPCRSSEVHPSDRPLGSVSGGRR--REAPRHPSPINSIYT 181
G ++ QE +VV + +E V EVHP DR G R RE PR S+
Sbjct: 311 GDKEEQETEVVDMRKQENEVVDMGVEEVHPLDRSEGRTLSPHRKEREDPRASGNEESVSE 370
Query: 180 RARD 169
+A+D
Sbjct: 371 KAQD 374
>At5g11430.1 68418.m01335 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 871
Score = 28.7 bits (61), Expect = 2.3
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -3
Query: 339 QEEDV-VL*LVRRSEKVPCRSSEVHPSDRPLGSVSGGRRREAPRHP-SPINSIYTRARDE 166
Q+ D+ V LVR++ K + E+ P DR VSGG + R P + +S+ T +DE
Sbjct: 345 QDTDIDVRSLVRKTHKGEFQV-EIEPVDRGTVDVSGGIMSRSKRRPRAKSHSVKTALKDE 403
Query: 165 TEPA 154
A
Sbjct: 404 AAKA 407
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 3 AGGGGTYPRGLTRGPTTSKINHINTIRFP 89
+GGG + PR +R P I+ + T+ FP
Sbjct: 441 SGGGSSSPRSESRAPIDDVIDRVTTMGFP 469
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 255 PLGSVSGGRRREAPRHPSPINSIYTRARDETEPALRHSCPDDTRP 121
PL + SG + SP N TRA D T PA+ D+ +P
Sbjct: 307 PLATSSGPSGPNSVPGNSPSNIFLTRAGDRTSPAVDGMDVDEAQP 351
>At4g23550.1 68417.m03393 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA binding domain
Length = 304
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 216 PRHPSPINSIYTRARDETEPALRHSCPDDTRPRHH*PLSIITKENE 79
P++P YT + P R+S TR + P +TK++E
Sbjct: 175 PQNPEKFTITYTNEHNHELPTRRNSLAGSTRAKTSQPKPTLTKKSE 220
>At3g60410.2 68416.m06757 expressed protein
Length = 324
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 243 VSGGRRREAPRHPSPINSIYTRARDETEPALRHSCPDDTRPRHH*PLS 100
+ G P+ PS +N I T R + + A S + P H+ PLS
Sbjct: 12 IHGSDAPPPPQPPSVVNGIETSRRQQQQIAAASSSLVKSHPLHNFPLS 59
>At3g60410.1 68416.m06756 expressed protein
Length = 324
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 243 VSGGRRREAPRHPSPINSIYTRARDETEPALRHSCPDDTRPRHH*PLS 100
+ G P+ PS +N I T R + + A S + P H+ PLS
Sbjct: 12 IHGSDAPPPPQPPSVVNGIETSRRQQQQIAAASSSLVKSHPLHNFPLS 59
>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
family protein similar to C-terminal zinc-finger
[Glycine max] GI:558543; contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 486
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 350 CPGTTTSGRASVSC*PPTCP---GTGACIQSQTGHICIPRYRPSADPR 484
C G + G +S+ P P G A ++G++C PRY ++ R
Sbjct: 217 CNGNRSDGSSSLWSQAPAVPYMHGNIATGSIESGNVCFPRYHETSSSR 264
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 16 VPTRADSQEVLPPVKSIILILFVFLCNNTKRLVVSWPRVVRAG 144
VP + D + L P K ++ +LF F C LV SWP R G
Sbjct: 202 VPDK-DKHKELEPEK-LLELLFRFTCFIGDALVESWPEADRKG 242
>At5g55510.1 68418.m06914 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
weak similarity to SP|Q99595 Mitochondrial import inner
membrane translocase subunit TIM17 A {Homo sapiens};
contains Pfam profile PF02466: Mitochondrial import
inner membrane translocase subunit Tim17
Length = 186
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 246 SVSGGRRREAPRHPSPINSIYTRARDETEPALRHSCPDDTRPR 118
SVS ++ +P+H P+ S+ DE + A C T+P+
Sbjct: 136 SVSFRQQTRSPQHDLPLLSLAIPIHDEIKGAFSSFCNSLTKPK 178
>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
family protein chromatin structural protein homolog
Supt5hp - Mus musculus,PID:g2754752
Length = 1029
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 402 VGG*QETEALPDVVVPGHRQGQEEDV 325
+GG E +PD++V H+ G++ DV
Sbjct: 916 IGGDAEAWFMPDILVDIHKAGEDTDV 941
>At2g23190.1 68415.m02770 cytochrome P450, putative Similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis thaliana];
Length = 543
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 240 RRFREVGRLDVLLNSDKGLFQSVERARVQHLLLDL 344
R R +G L++ + F SV + ++HLLL L
Sbjct: 171 RNLRRIGTLEIFSSHKLNGFLSVRKDEIRHLLLRL 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,702,495
Number of Sequences: 28952
Number of extensions: 214546
Number of successful extensions: 724
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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