Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307E07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 27 1.3
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M... 27 2.2
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 25 5.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 5.2
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 25 6.8
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 25 6.8
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa... 25 9.0
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 9.0
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ... 25 9.0
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 9.0
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 27.5 bits (58), Expect = 1.3
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 282 GRPRTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTERPWVT--KVLC 455
G P +G++T +GS T P +SPL T S RSS+ WV K+
Sbjct: 205 GSPTKSIYDQNGLTTPRPIGSDDLTHMYDPYTSPLR-TPSRTLSRSSSHYLWVRHGKLTR 263
Query: 456 SYHISRHP*P 485
S + +H P
Sbjct: 264 SVSLLQHKTP 273
>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 214
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 208 ELRTNTRCSEGHRKILQ--RRFIHHFTDDLGQSQQSIMGYPLLDRSGVDARRVRSRRN 375
E + N G ++Q +R ++ + +GQ + I G P +R V+ R+RS R+
Sbjct: 16 EEKLNDLSKSGENSVIQSCQRLLNEIDEVIGQMEIEITGIPTSERGLVNG-RIRSYRS 72
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 327 TGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTER 431
TG V S +S PL+ + +SG PR+S R
Sbjct: 470 TGDVKSFDSQESNIIESEPLSASNASGKPRTSVNR 504
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 294 TVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTE 428
T +T Y S+T SV ++ S S+P++ T+SS + S++
Sbjct: 249 TESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQ 293
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 251 IFLCPSEQRVLVRSSVFSIFAHRLFCRHWQKPDGL 147
I+L P + S S+ A L R W+KP L
Sbjct: 824 IYLNPMWASAAMMFSSLSVLASSLLLRRWKKPKSL 858
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = +2
Query: 233 QKDIGKFYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGA 412
+KD+ + + DS + ++ R+ L IHY+ +S + + +A + L ++
Sbjct: 277 KKDLQEVLQSDSNHVPSVLTELRSGLDQTIHYFNAVQSYKSKVDSATSILEALAEELNKN 336
Query: 413 AVQHRETMGHESALFLSYFQTPL 481
+ ++ HE+A L QT L
Sbjct: 337 QLTNQR---HEAAHELMRAQTGL 356
>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 359
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 279 YGRPRTVATIYHGISTTGSVGSRRKTSQEPP 371
+G+P VA + I T+ + GS+ Q PP
Sbjct: 259 FGKPFIVAAPFSSIDTSLASGSQITIEQRPP 289
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 366 PPQSSPLAWTTSSGAPRSSTERP 434
PP S P + SS RSS +RP
Sbjct: 98 PPSSDPFSSPLSSSLHRSSPKRP 120
>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 2 RIRHEVKIIFSCLLFVFLGSV 64
R++H +KI C+L +F SV
Sbjct: 46 RVKHVLKITIICILILFADSV 66
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 269 YIILRTTSDSRNNLSWDIHYWIGRE 343
+++ R + NN SW +W GR+
Sbjct: 1662 FLLPREVASGENNYSWWDGHWFGRK 1686
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,886
Number of Sequences: 5004
Number of extensions: 55021
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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