Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   0.82 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   1.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.5  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   3.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 402 NLSSRPTVRIAAAPDSSCVDSRP 334
           N S  P  RIA+AP SS   S P
Sbjct: 508 NSSPSPNPRIASAPSSSTSSSPP 530


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 216 NQYPLLRRT*ENSTKEIHTSFYGRPRTVA 302
           +QYPL+RRT E+   E        P  VA
Sbjct: 556 DQYPLMRRTMESVAAERLNKIGKNPNLVA 584


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 216 NQYPLLRRT*ENSTKEIHTSFYGRPRTVA 302
           +QYPL+RRT E+   E        P  VA
Sbjct: 524 DQYPLMRRTMESVAAERLNKIGKNPNLVA 552


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 82  GRRPCP-DGSQENKKETRKNDLHLV 11
           G R C  D S+E KK+ R + LH V
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLHNV 273


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 389 LDDKFGGAAVQHRETMGHESALFLSYFQ 472
           +D    GA + +   M   SA+F+S+FQ
Sbjct: 560 VDSSTSGATIVNYSIMIFLSAVFISFFQ 587


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 208 LYSPYLHTGCSADIGKSRMDFGFVTGV 128
           L+  ++H G    +G S +  GF  G+
Sbjct: 87  LFKGFVHLGAGLAVGFSGLAAGFAIGI 113


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 175 QNSRCANMENTE 210
           +NSRCAN +N +
Sbjct: 410 RNSRCANFDNQD 421


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 411  APPNLSSRPTVRIAAAPDSSCVDS 340
            A P  SS      +AAP  +C DS
Sbjct: 1037 AKPGKSSGAAAMASAAPMPACFDS 1060


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,574
Number of Sequences: 438
Number of extensions: 3501
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)