Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    29   0.32 
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    25   9.0  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 21/67 (31%), Positives = 40/67 (59%)
 Frame = +2

Query: 80  TKRRGKLQSNHNVAPIQVDNVINNIDRSYNDMKITISRPFASNAVVQINLSHVLKAVVAF 259
           TK++ K  S  +VAP +VDN  ++I++S + +    + PF     + ++ +H+L  VV F
Sbjct: 608 TKKKNKHASETSVAPEKVDN--SSIEQSSSFLTKLYTFPFTIITWL-MHPTHLL-LVVMF 663

Query: 260 KGLLMEW 280
             L+++W
Sbjct: 664 SMLVLQW 670


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 161 SYNDMKITISRPFASNAVVQINLSHVLK 244
           SYN + +   R   +N  V  NLSHV K
Sbjct: 2   SYNGIGLPTPRGSGTNGYVMRNLSHVKK 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,744
Number of Sequences: 5004
Number of extensions: 33932
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)