Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0354 + 23411485-23411802,23411886-23412176,23414610-234146...    29   2.3  
10_07_0160 - 13656172-13656476,13656799-13657528                       27   6.9  
01_06_0227 - 27686525-27686607,27686731-27686803,27687027-276873...    27   9.1  

>03_05_0354 +
           23411485-23411802,23411886-23412176,23414610-23414675,
           23415186-23415645,23415963-23416189,23416362-23416649,
           23416955-23416966
          Length = 553

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 250 CCFQ-GLIDGVGHGERLWRDPRP 315
           C F+  L+DG G G+RL R PRP
Sbjct: 172 CLFELRLVDGAGAGDRLRRRPRP 194


>10_07_0160 - 13656172-13656476,13656799-13657528
          Length = 344

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 312 SRVSP*PFTMTHSINKPLKATTAFKT*LRLICTTALLANGLDMVIFI 172
           S +SP P +++ S++ PL  + +     RL+C  +     L   +FI
Sbjct: 57  SLLSPLPASVSSSLSSPLSISPSICRSARLLCPNSTYFQSLSSTVFI 103


>01_06_0227 -
           27686525-27686607,27686731-27686803,27687027-27687315,
           27687755-27687832,27687869-27687992,27688796-27688940,
           27689046-27689166,27689386-27689542,27690704-27690840,
           27691863-27692122,27692199-27692387,27692572-27692775,
           27693390-27693436,27694435-27694462
          Length = 644

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 35  LSQNSLKRSYINSGSTKRRGKLQSNHNVAP 124
           L QN L+R ++N GS    G+ Q+N +  P
Sbjct: 350 LKQNRLQRDHVNEGSPSYVGEDQNNASDCP 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,282,957
Number of Sequences: 37544
Number of extensions: 203025
Number of successful extensions: 390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)