Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35154| Best HMM Match : LTXXQ (HMM E-Value=1.1)                     28   4.1  
SB_23201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  

>SB_35154| Best HMM Match : LTXXQ (HMM E-Value=1.1)
          Length = 416

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 101 QSNHNVAPIQVDNVINNIDRSYNDMKITISRPFASNAVVQ 220
           QS  +  P+Q+D V++ +  +   +   +  P  SNAV Q
Sbjct: 158 QSQASEEPVQIDRVVSGLGTTNATVSFKLQAPLPSNAVNQ 197


>SB_23201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 101 QSNHNVAPIQVDNVINNIDRSYNDMKITISRPFASNAVVQ 220
           QS  +  P+Q+D V++ +  +   +   +  P  SNAV Q
Sbjct: 23  QSQASEEPVQIDRVVSGLGTTNATVSFKLQAPLPSNAVNQ 62


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/75 (20%), Positives = 33/75 (44%)
 Frame = +2

Query: 104  SNHNVAPIQVDNVINNIDRSYNDMKITISRPFASNAVVQINLSHVLKAVVAFKGLLMEWV 283
            S+   A  Q  +V+  I + +N ++ ++   F      ++     +      KGL+  W 
Sbjct: 5787 SSRGKARSQAIDVVTQIVKKHNQLRYSVIL-FGETPSTKLTFGQRMYDANTLKGLMTTWA 5845

Query: 284  MVKGYGETLDLWTES 328
            M KG  + +++  E+
Sbjct: 5846 MPKGDPDVVEVMAEA 5860


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,562,728
Number of Sequences: 59808
Number of extensions: 258267
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)