Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E06f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075500-1|AAL68310.1|  293|Drosophila melanogaster RE51713p pro...   113   1e-25
AE014297-321|AAF51976.1|  293|Drosophila melanogaster CG1245-PA ...   113   1e-25

>AY075500-1|AAL68310.1|  293|Drosophila melanogaster RE51713p
           protein.
          Length = 293

 Score =  113 bits (273), Expect = 1e-25
 Identities = 60/134 (44%), Positives = 88/134 (65%), Gaps = 3/134 (2%)
 Frame = +2

Query: 2   IHEYSSFAHTLLSQNSLKRSYINSGSTKRRGKLQSNHNVAPIQVDNVINNIDRSYNDMKI 181
           +H++S  A   L+QN+L+RSY N  S KR+    S+ N  P  +D +++ I+   +    
Sbjct: 106 VHDHSFLAFNNLNQNTLRRSY-NYCSQKRQRLPFSSFNNDPDHIDKLLSEINTPPHT-SY 163

Query: 182 TISRPFASNAVVQINLSHVLKAVVAFKGLLMEWVMVKGYGETL---DLWTESRHHVFRKV 352
            I RPF +NAV  + +S+V+KA + FKG+L+EWV VKG+ E L   DLW ESR+ VFRKV
Sbjct: 164 RIFRPFGTNAVTIVTISNVMKAAIVFKGVLIEWVTVKGFDEPLEHDDLWAESRYEVFRKV 223

Query: 353 TENAHAAMXPFYSP 394
            ++AH+AM  F+SP
Sbjct: 224 QDHAHSAMLHFFSP 237



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 400 PELAVRXFMTWLHXYVNLF 456
           P+LAV+ ++TWL+ +V LF
Sbjct: 240 PDLAVKSYITWLNSHVKLF 258


>AE014297-321|AAF51976.1|  293|Drosophila melanogaster CG1245-PA
           protein.
          Length = 293

 Score =  113 bits (273), Expect = 1e-25
 Identities = 60/134 (44%), Positives = 88/134 (65%), Gaps = 3/134 (2%)
 Frame = +2

Query: 2   IHEYSSFAHTLLSQNSLKRSYINSGSTKRRGKLQSNHNVAPIQVDNVINNIDRSYNDMKI 181
           +H++S  A   L+QN+L+RSY N  S KR+    S+ N  P  +D +++ I+   +    
Sbjct: 106 VHDHSFLAFNNLNQNTLRRSY-NYCSQKRQRLPFSSFNNDPDHIDKLLSEINTPPHT-SY 163

Query: 182 TISRPFASNAVVQINLSHVLKAVVAFKGLLMEWVMVKGYGETL---DLWTESRHHVFRKV 352
            I RPF +NAV  + +S+V+KA + FKG+L+EWV VKG+ E L   DLW ESR+ VFRKV
Sbjct: 164 RIFRPFGTNAVTIVTISNVMKAAIVFKGVLIEWVTVKGFDEPLEHDDLWAESRYEVFRKV 223

Query: 353 TENAHAAMXPFYSP 394
            ++AH+AM  F+SP
Sbjct: 224 QDHAHSAMLHFFSP 237



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 400 PELAVRXFMTWLHXYVNLF 456
           P+LAV+ ++TWL+ +V LF
Sbjct: 240 PDLAVKSYITWLNSHVKLF 258


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,391,455
Number of Sequences: 53049
Number of extensions: 367199
Number of successful extensions: 661
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)