Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28409-3|AAN60500.1|  327|Caenorhabditis elegans Hypothetical pr...    31   0.50 
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    29   1.5  
U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U64846-2|AAG24112.1|  332|Caenorhabditis elegans Serpentine rece...    27   8.1  
AL032661-1|CAA21755.1|  182|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U28409-3|AAN60500.1|  327|Caenorhabditis elegans Hypothetical
           protein T25D10.1 protein.
          Length = 327

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 32  LLSQNSLKRSYINSGSTKRRGKLQSNHNVAPIQVDNVINNIDRSYNDMKITISRPF 199
           L +QN + +S  N+        L+SN N +   +  ++N+    Y D+ + I+ PF
Sbjct: 174 LEAQNLITKSQRNNFKICVHATLESNKNCSVKAIAQILNHYTNEYEDVMLIIASPF 229


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/78 (20%), Positives = 37/78 (47%)
 Frame = +2

Query: 5   HEYSSFAHTLLSQNSLKRSYINSGSTKRRGKLQSNHNVAPIQVDNVINNIDRSYNDMKIT 184
           H Y  F   L +  + ++ Y+++  + R GK+  + +   + V   ++N D    D  +T
Sbjct: 79  HSYRKFVIPLSTDTNKQKQYLSAARSVRLGKILEDLDHMAVHV-AYVHNSDNGTLDEPMT 137

Query: 185 ISRPFASNAVVQINLSHV 238
           + R   + +V +I+   +
Sbjct: 138 LPRTIVTASVKRIDFHDI 155


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/78 (20%), Positives = 37/78 (47%)
 Frame = +2

Query: 5   HEYSSFAHTLLSQNSLKRSYINSGSTKRRGKLQSNHNVAPIQVDNVINNIDRSYNDMKIT 184
           H Y  F   L +  + ++ Y+++  + R GK+  + +   + V   ++N D    D  +T
Sbjct: 34  HSYRKFVIPLSTDTNKQKQYLSAARSVRLGKILEDLDHMAVHV-AYVHNSDNGTLDEPMT 92

Query: 185 ISRPFASNAVVQINLSHV 238
           + R   + +V +I+   +
Sbjct: 93  LPRTIVTASVKRIDFHDI 110


>U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical
           protein B0336.6 protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 229 KSRFESCCCFQGLIDGVGHGERLWRDPR--PVDRVTS 333
           K R++       ++DG+GHG R    PR  P+ R TS
Sbjct: 135 KQRYQRTPIDFSVLDGIGHGVRTSDPPRAAPISRATS 171


>U64846-2|AAG24112.1|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein35 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
 Frame = -2

Query: 253 NNSFQ--NVT*VDLYNCIT---CKWS*Y-GNFHIVIGSVYVVYDII 134
           NN F+  ++  + +YNC      +WS   G  H +IGS+ +VY +I
Sbjct: 2   NNIFKYGSIENIPMYNCSARTPAQWSYESGESHPIIGSLQIVYGVI 47


>AL032661-1|CAA21755.1|  182|Caenorhabditis elegans Hypothetical
           protein Y73F4A.1 protein.
          Length = 182

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 21/79 (26%), Positives = 38/79 (48%)
 Frame = +2

Query: 68  NSGSTKRRGKLQSNHNVAPIQVDNVINNIDRSYNDMKITISRPFASNAVVQINLSHVLKA 247
           NSG T ++ K+  + +V+ + V    N++  + N +K+T+SRP         +L   L  
Sbjct: 83  NSGYTPKKKKVVVD-DVSYVTV----NDVQITGNKLKVTVSRPLGPAGPRNFSLDQCLNW 137

Query: 248 VVAFKGLLMEWVMVKGYGE 304
           +V   G L      K +G+
Sbjct: 138 MVVPGGSLSNGKFKKHHGK 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,914,810
Number of Sequences: 27780
Number of extensions: 187583
Number of successful extensions: 443
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)