Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307E05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 29 0.56
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 3.0
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 26 3.9
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 5.2
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 5.2
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 6.8
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 6.8
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 9.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 9.0
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 9.0
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 28.7 bits (61), Expect = 0.56
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 476 CRWFPELILSVP*QASDGSVYSCVRRCLFH 387
CR E+ ++P A + S SC+ C+FH
Sbjct: 139 CRVLTEIAETIPSNALEESTVSCLLECVFH 168
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 420 CVLVRSKMPVSLLNVLRELYYFFWECGG 337
C L++ P LL +R L + FW C G
Sbjct: 460 CYLMKQTSPEPLL--IRNLLFSFWSCNG 485
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 219 LVAENAKRRYLHVLPI*CEMVAVCLFFVGYGLYFMWIAFSLIYMRQLGDY 70
LV +RR H +V L + YG F+ + +++Y+ L DY
Sbjct: 217 LVLHLEQRRADHWQMFAHHIVTCALIILSYGFNFLRVGNAILYIFDLSDY 266
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 273 TGRRSSLR*TGQIRNTLTFNENLRIPRKNNTVRAKRSTVKQASSNAR 413
T ++SSL + Q NTLT N+ K+++ A ++ + + N R
Sbjct: 175 TSKKSSLSDSSQKENTLTLNKENEFSSKDDSNFAFHNSSTKTTINRR 221
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 283 VARYAERDKFGIH*PLTKTSAFPEKIIQFAQN 378
V A FGIH + K + FP KII+ A N
Sbjct: 872 VCEGASDRSFGIH--VAKLAHFPPKIIEMASN 901
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 472 DGFRN*FYRCHNKR 431
+GF+N +Y CHN R
Sbjct: 559 EGFQNYYYSCHNGR 572
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 337 FSLKV-NVFRIC-PVQRSELRRPVTASAVATKLVDVYGCATIG 215
+SL + NVF + P+ +L P S+ A KL ++YG TIG
Sbjct: 437 YSLSIENVFDVLSPLSVQDL--PGVGSSQAQKLFNLYGVRTIG 477
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 473 RWFPELILSVP*QASDGSVYSCVRRCLF 390
+W P L L VP + +++ VR+C F
Sbjct: 719 QWQPGLPLKVPVPDTVKNIFEAVRKCTF 746
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 202 EAPISSRPSHIM*NGGCLSFLCWIRS 125
E P S + NGGC S++C RS
Sbjct: 387 EPPSGSGVLPFLTNGGCYSYICRSRS 412
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1
Query: 209 RMRSADIFTSFPYNVKWWLFVFSLLDTVYILCGSPS 102
R RSA F SF Y+ + LF + YI+C SPS
Sbjct: 552 RSRSAFEF-SFVYDNEIVLFDTCYMVCTYIVCNSPS 586
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,077
Number of Sequences: 5004
Number of extensions: 45010
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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