Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842...    28   4.0  
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910...    28   5.2  
02_04_0103 - 19768288-19768737                                         28   5.2  
08_01_1006 - 10191817-10191822,10192449-10192745,10192826-101929...    27   9.1  

>05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,
            8427110-8427205,8427530-8427616,8428639-8428767,
            8428922-8429098,8429185-8429295,8429642-8429761,
            8430767-8432427,8432485-8432867,8433707-8434470,
            8434532-8434813,8436158-8436493
          Length = 1523

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 398  CLFHC*TFCANCIIFSGNAEVFVKGQCIPNLS 303
            CL H    C NC +FSG    ++K    PNLS
Sbjct: 940  CL-HLRYLCLNCFVFSG-LPAWIKSSLAPNLS 969


>04_04_0996 +
           29990255-29990425,29990797-29990841,29991024-29991098,
           29991481-29991691,29992057-29992442,29993202-29993425,
           29993529-29993664,29993699-29993761,29993842-29994021
          Length = 496

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
 Frame = -2

Query: 412 RAFEDACFTVERFA-----RTVLFFLGMRRFSLKVNVFRICPVQRSELRRPVTASAVATK 248
           R   + C T+E        RTV+ FL    F+ K+N+       +  LR  V      T 
Sbjct: 279 RHIGEKCMTIEEKLNSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTA 338

Query: 247 LVDVYGCATIGCREC 203
           +  V GC  + C  C
Sbjct: 339 ISRVSGCNHMLCSNC 353


>02_04_0103 - 19768288-19768737
          Length = 149

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 123 IDRIQQRKDKQPPFHIIWEGREDIGASHSRQP 218
           + R ++R+   PP    W  RED+ A+ + +P
Sbjct: 55  MSRCRRREPSPPPLPPTWHAREDVAAAATWEP 86


>08_01_1006 -
           10191817-10191822,10192449-10192745,10192826-10192975,
           10194558-10195370
          Length = 421

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 220 IGCRECEAPISSRPSHIM*NGGCLSFLCWIRSIFYVDRLQFNIYE 86
           IGCR  E P     ++I      +SF    R I  V +L FNI+E
Sbjct: 227 IGCRIPEEPPLLEEAYIDIGNSFMSFHEIFRGIITVRKLWFNIHE 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,672
Number of Sequences: 37544
Number of extensions: 283724
Number of successful extensions: 742
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)