Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   1.8  
SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   5.4  
SB_199| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.4  

>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 340  RFSLKVNVFRICPVQRSELR-RPVTASAVATKLVDVYGCATIGCRECEAPI 191
            +F +K N FR  P++   +R  PVT  + A+  V+ YGC T G R C  P+
Sbjct: 4021 QFIVKTNTFRR-PIRARYIRVHPVTWYSWASMRVEFYGCVT-GPR-CNRPL 4068


>SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1410

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 194 DIFTSFPYNVKWWLFVFSLLDTVYILCGS 108
           D+  S    ++ WLF + L DTV ILC S
Sbjct: 54  DVIYSKSTALQQWLFGYELADTVTILCKS 82


>SB_199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 127 TVSNKEKTNSHHFTLYGKDVKISALRILGNQS*RTRRHLQVS 252
           T+S ++ T   H  +   DV     RIL  Q   TRRH  +S
Sbjct: 52  TISQQDVTTRCHCKMSQYDVATKMSRILSQQDVTTRRHGMMS 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,373,018
Number of Sequences: 59808
Number of extensions: 344306
Number of successful extensions: 847
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)