Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E03f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   2.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   2.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.7  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.7  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   8.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.7  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   8.7  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 281 PHVAIAVDPSTPPETPPATIGRS 349
           PH A   +P TPP + P    +S
Sbjct: 97  PHFAYNHNPLTPPNSEPLVSPKS 119



 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 372 TMYSGYHI*ESLLTCVQCRVE 434
           T++ GYH   +  TC  C VE
Sbjct: 487 TIHMGYHGFHNPFTCNMCGVE 507


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 62  PESNPRPRAPPWGRASCR 9
           P+  P PR PP+ R   R
Sbjct: 75  PQGMPYPRFPPYDRMDIR 92


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 131  YVQNFELDHLEDHNLVKREPLRGGAYE 211
            Y Q+F L+  E+H L  + P  G A E
Sbjct: 1643 YGQSFRLEKPENHGLNAKAPGPGQAGE 1669



 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 9    SARGTAPWWST 41
            S+  T+PWW+T
Sbjct: 1044 SSTTTSPWWTT 1054



 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 337  DWP*SMSCRPS*RCTLA 387
            DWP +  C P    T+A
Sbjct: 2277 DWPENTECHPDASSTMA 2293


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 166 IFEMVQLKVLYVFISELIVISFAMRLQWKGLHSARLRAIHDRVLHHGAV 20
           I  ++ L +LY  I++ ++ + A  +  K + +  LRA    VL  G V
Sbjct: 247 IIPLIILLILYCIIAKNLMSNAATLVLNKHIDNISLRARKQVVLMLGTV 295


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 222 VCINSYAPPRSGSR 181
           VCIN   P RSG +
Sbjct: 197 VCINGDTPRRSGCK 210


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 13/62 (20%), Positives = 25/62 (40%)
 Frame = -1

Query: 440 QNFHTALYACQEALSYVVARVHRQLGRHDMDYGQSSPEGFQEVYWDQQR*LHAVVDTVPH 261
           + +HT      E  +  +    R   ++ M    +   GF  VY++ +  +H  V +   
Sbjct: 43  EGYHTPESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESRAHIHCSVKSESS 102

Query: 260 QA 255
           QA
Sbjct: 103 QA 104


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 119 LADEYVQNFELDHLEDHNLVKREPLRGGAYELIQTPP 229
           L D   +NF +DH+ +  +  R  +    + L+Q  P
Sbjct: 275 LLDSEKKNFIVDHISNQFVAFRRKIYKWNHGLLQGDP 311


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 81  FHCSRIAKLMTISSLMNTYRTLSWTI 158
           F C +I KL     L+     L WTI
Sbjct: 223 FMCKKINKLYGHQLLLTILTYLIWTI 248


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,189
Number of Sequences: 336
Number of extensions: 2676
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)