Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.32 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.7  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   3.0  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   3.0  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   3.9  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.2  
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    25   5.2  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   6.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   6.8  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    25   6.8  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   9.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = +2

Query: 224 PPACARALRPWPDAGPYPQPHVAIAVDPSTPPETPPATIGRSP 352
           PP     + P P   P P P  A  +    PP  PP   G  P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775



 Score = 25.8 bits (54), Expect = 3.9
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
 Frame = +2

Query: 161 EDHNLVKREPLRGGAYELIQTP-PACARALRPWPDAG----PYPQPHVAIAVDPSTPPET 325
           E   L+ + P       ++ TP PA      P P  G    P P P VA A  P  PP  
Sbjct: 723 EQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782

Query: 326 PPATIGRS 349
           P  + G S
Sbjct: 783 PAVSAGGS 790


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +2

Query: 215  IQTPPACARALRPWPDAGPYPQPHVAI--AVDPSTPPETPPATIGRSP 352
            +  P A    + P  +A P P+P V +     PST P  P  + G  P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228



 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 227  PACARALRPWPDAGPYPQPHVAIAVDPSTPP-ETPP 331
            P+ A    P P +G  P P  A  V P  PP E PP
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 209 RTLRHEAAHVSPGCDLRD 156
           RTLRHE  HVSP   L D
Sbjct: 401 RTLRHEKRHVSPKSPLID 418


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
 Frame = +2

Query: 83   PLQPHREADDD--QLADEYVQNFELDHLEDHNLVK-REPLRGGAYEL--IQTPPACARAL 247
            PLQP     D+  Q  DE  ++ E D     +       L GG      + TPP   ++ 
Sbjct: 1638 PLQPSGHDSDNWSQHGDEEEEDSEDDIRSSKDAAALAAKLFGGMAPAHPVSTPPVRPQSA 1697

Query: 248  RPWPDAGPYPQPHVAIAVDPSTPPETPPATIG 343
             P   + P P P   ++V P  PP  PP   G
Sbjct: 1698 APPQMSAPTPPP-PPMSVPP--PPSAPPMPAG 1726


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 251 PWPDAGPYPQPHVAIAVDPSTPPETPPAT 337
           P+     YP P       PS PP+  PAT
Sbjct: 207 PYSSPTSYPPPLCPATYCPSNPPQLAPAT 235


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 275 PQPHVAIAVD--PSTPPETPPATI 340
           P+PH     D  PSTP + PP+T+
Sbjct: 435 PEPHSESISDTRPSTPRKVPPSTV 458


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 290 AIAVDPSTPPETPPATIGRSP 352
           ++ VD S+PP T P + G +P
Sbjct: 63  SLKVDVSSPPSTAPGSAGSTP 83


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 291 LSLLIPVHLLKPLRRRLAVVHVV 359
           L L +PV+  KP RRR+  VH++
Sbjct: 7   LELPLPVNQQKPRRRRILKVHLL 29


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 272 YPQPHVAIAVDPSTPPETPPATIG 343
           Y  P VA+ +DP    E+P   IG
Sbjct: 141 YQDPFVAVVLDPKRSLESPYVNIG 164


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 263 AGPYPQPHVAIAVDPSTPPETPPATIGRSP 352
           AG  P P    +  P  PP + P+T GR P
Sbjct: 348 AGSIPLPPQGRSAPPPPPPRSAPST-GRQP 376



 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 248 RPWPDAGPYPQPHVAIAVDPSTPPETPPATIGRS 349
           R  P  G  P P ++ +   S PP  PPA  GRS
Sbjct: 367 RSAPSTGRQPPP-LSSSRAVSNPPAPPPAIPGRS 399


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 69  LCKPFHCSRIAKLMTISSLMNTYRTLSWTISKI 167
           + KPFH   +   +  S L N + +  W + ++
Sbjct: 152 IAKPFHAGHLRSTIIGSFLANLHESQGWKVHRV 184


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 302 QQR*LHAVVDTVPH-QARVGEHEHMPAAFVSIRTLRHEAAHVSPGCDLRDGPA 147
           ++R LH   D VPH ++   +HE  P  F S+ ++ ++  H     +  D PA
Sbjct: 378 KKRILHVQNDYVPHYRSFYQQHEQNPVLF-SLYSVGYKLVHPENAKNTFDHPA 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,261
Number of Sequences: 5004
Number of extensions: 41727
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)