Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    28   0.73 
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    28   0.97 
SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.3  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   3.0  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    26   3.9  
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual     25   5.2  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   6.8  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   9.0  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   9.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   9.0  

>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 285 SKPPVAMPIS-VTLLQYSFHNILPLSTSVFN-IVKLWHLVNML 163
           S PP    ++ +TLL  +FHN++P S+S    + +  H+ ++L
Sbjct: 117 SSPPCTSALTEITLLPPTFHNLIPSSSSYETAVAEFLHMEDLL 159


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 19/66 (28%), Positives = 37/66 (56%)
 Frame = +2

Query: 113 GNSDTVQFSTLASLHGINMFTKCHNLTMLNTLVDNGKILWKEYCKSVTLIGIATGGLECD 292
           G  +T+  S +    GI + T C   T + +++D GK +   +  S+ +IG+ TGG++ +
Sbjct: 156 GRYNTIVCSAVIYFIGILILT-C---TAIPSVIDAGKSMGG-FVVSLIIIGLGTGGIKSN 210

Query: 293 LELLLA 310
           +  L+A
Sbjct: 211 VSPLMA 216


>SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 116

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
 Frame = +2

Query: 77  TDSGVPIFSRKRGNSDTVQFSTLASLHG-----INMFTKCHNLTMLNTLVDNGKILWKEY 241
           T+S   +FS K  +SDT Q   +  L       ++   KC     LN  +++ +   KE+
Sbjct: 2   TNSDDDLFSEKSTSSDTQQVQNILELEAKIPDILSSAGKCIEAIQLNNSLEDFRKYSKEF 61

Query: 242 CKSVTLIGIATGGLECDLELLLASI 316
            ++V    I+TG     LEL  A +
Sbjct: 62  LETVEF--ISTGLRRQALELEKAEV 84


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 389 DLRQCYPLIDYLLESLDPNAISSPLPTLVLDLVQSFLCP 505
           D+ +  P +  LL  L   + + PLP  V++L+Q  L P
Sbjct: 649 DVTEFIPYVLQLLSQLVEASGNEPLPDFVVNLIQPCLSP 687


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 106 PRKYWYTTISGYGNYYNRHF*LYNLLS 26
           PRK+    + G  + +N+H  LY LLS
Sbjct: 47  PRKFCLLPLEGKNHLHNKHVSLYCLLS 73


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 342 PMQNIMTSCIDAKRSSKSHSKPPVAMPISVTLLQYSFHNILPLST 208
           P  N+ T C   KRS+    K P  MP+ + L   +    +PL +
Sbjct: 100 PRDNVKTHC--PKRSASCCGKKPDVMPLKINLESQTDFMGMPLQS 142


>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 304 LGIYT*CHDILHWKEGTRNI 363
           LG+ T CH I+ WK  ++ I
Sbjct: 79  LGVQTNCHSIVPWKSSSKLI 98


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 265 HSNWWLRMRFRTSLGIYT*CHD 330
           + NW+  ++  T+  I+T CHD
Sbjct: 572 NGNWYNGVKHETATDIFTTCHD 593


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 268 SNWWLRMRFRTSLGIYT 318
           + WW  + FRT L I+T
Sbjct: 696 NKWWPSLNFRTMLDIFT 712


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 385 FGLINIXXXXXFLLSNAKYHDIMYRCQE 302
           FG + I      + SN KY+DI+ R ++
Sbjct: 211 FGCLQISPISILMRSNQKYYDILSRFED 238


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 98  FSRKRGNSDTVQFSTLASL--HGINMFTKCHNLTMLNTLVDNGKILWK 235
           +   R N  +V     +S+  H  ++     +L  LN+L+D+G I W+
Sbjct: 25  YPTSRSNLQSVSIDRNSSIDSHETDLSAGSSSLHGLNSLIDSGSIHWQ 72


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 277  TSCYADKCDALTVLLP*YFAIINKRIQHC-*IVAFSKHVNTM 155
            ++   + CD ++ L P  FA+++  + H   I+AF K VN M
Sbjct: 1175 SAALGELCDVISKLPPENFALLDSLLHHLRRIIAFEK-VNKM 1215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,703
Number of Sequences: 5004
Number of extensions: 41685
Number of successful extensions: 118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)