Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0807 + 6323885-6324264,6324369-6324542,6324636-6324746,632...    28   5.2  
06_01_0598 + 4324129-4326150                                           28   5.2  
04_03_0950 - 21049767-21050450                                         28   5.2  
01_05_0342 - 21147940-21148213,21149626-21149697,21150273-211503...    28   5.2  
07_03_1135 - 24213619-24213851,24214182-24214248,24214339-242144...    27   6.9  
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432...    27   6.9  
07_03_1393 - 26245105-26246862                                         27   9.1  
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178           27   9.1  

>07_01_0807 +
           6323885-6324264,6324369-6324542,6324636-6324746,
           6324813-6324906
          Length = 252

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 518 IVELVDTKSSVQDQVLKLVMDLKLHSDLGI 429
           + + +D K S+ D+V +L+   KLH  LGI
Sbjct: 202 VYDSMDKKESMFDKVFELIDSFKLHVGLGI 231


>06_01_0598 + 4324129-4326150
          Length = 673

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 161 INMFTKCHNLT----MLNTLVDNGKILWKEYCKSVTLIGIATGGLECDLELLLASIH 319
           +N+++KC +L     + N + D   + W        + G + G ++   E+L  +IH
Sbjct: 467 LNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIH 523


>04_03_0950 - 21049767-21050450
          Length = 227

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 227 LWKEYCKSVTLIGIATGGLECDLELLLASIHDVMIFCI 340
           +WK++C  +T   +  GG +     +L S+ DV  +C+
Sbjct: 99  MWKKFCHDITAYVVVGGGTQ-----ILISVEDVGTYCM 131


>01_05_0342 -
           21147940-21148213,21149626-21149697,21150273-21150397,
           21150625-21150684,21150824-21150902,21151041-21151126,
           21151224-21151544
          Length = 338

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 234 FHNILPLS-TSVFNIVKLWHLVNMLIPCNDANVE 136
           +H +LP   T + + ++ WH+V  L  CN  N++
Sbjct: 149 YHALLPKDVTLICDALRSWHIVGRLGGCNSMNMQ 182


>07_03_1135 -
           24213619-24213851,24214182-24214248,24214339-24214407,
           24214862-24214978,24215078-24215149,24215544-24215638,
           24216374-24216455,24216559-24216690,24217381-24217437,
           24217764-24217805,24217878-24217976,24218056-24218076
          Length = 361

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 314 IHDVMIFCIGKKELETLKNVDQTKRDLRQC 403
           + +++ FC  K+E+E LKN    K +L +C
Sbjct: 23  VENLIKFCPTKEEMELLKNYTGDKENLGKC 52


>05_05_0005 +
           21442819-21442916,21443053-21443119,21443226-21443291,
           21443368-21443414,21443480-21443543,21443627-21443707,
           21443781-21443823,21443912-21443961,21444262-21444343,
           21445045-21445120,21445451-21445558,21445782-21445833,
           21445911-21446570,21446652-21448067
          Length = 969

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 425 LESLDPNAISSPLPTLVLDLVQSFLCPQAQQ 517
           + S D +++SSPL T  L   Q F+C    Q
Sbjct: 690 MASNDDSSLSSPLDTFYLSFEQEFVCKDDSQ 720


>07_03_1393 - 26245105-26246862
          Length = 585

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = +2

Query: 164 NMFTKCHNLTMLNTLVDNGKILWKEYCKSVTLIGIATGGLECDLELLLASIHDVMIFCIG 343
           N F K  +   ++ L+D+ K LW    +        +GG     +  +  I D  +F   
Sbjct: 504 NYFDKLRSYFHVH-LLDDYKELWSNTSEWYNETTTLSGGRPVPFDAYMRVIVDTEVFYRA 562

Query: 344 KKELETLKNVDQTKRD 391
           K ++ET  N+ +  +D
Sbjct: 563 KTQVETFNNLTRDCKD 578


>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
          Length = 1143

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 403 LSFNRLFVGIPRSECNFKSI 462
           LSFN+L+  IP+S CN + +
Sbjct: 587 LSFNKLYGDIPQSICNLRDL 606


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,376,206
Number of Sequences: 37544
Number of extensions: 234346
Number of successful extensions: 606
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)